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PrecursorIonSelectionPreprocessing Member List

This is the complete list of members for PrecursorIonSelectionPreprocessing, including all inherited members.

bin_masses_PrecursorIonSelectionPreprocessingprotected
check_defaults_DefaultParamHandlerprotected
counter_PrecursorIonSelectionPreprocessingprotected
dbPreprocessing(const String &db_path, bool save=true)PrecursorIonSelectionPreprocessing
dbPreprocessing(const String &db_path, const String &rt_model_path, const String &dt_model_path, bool save=true)PrecursorIonSelectionPreprocessing
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
error_name_DefaultParamHandlerprotected
f_max_PrecursorIonSelectionPreprocessingprotected
filterTaxonomyIdentifier_(FASTAFile::FASTAEntry &entry)PrecursorIonSelectionPreprocessingprotected
fixed_modifications_PrecursorIonSelectionPreprocessingprotected
fixed_mods_PrecursorIonSelectionPreprocessingprotected
getDefaults() constDefaultParamHandler
getFixedModifications()PrecursorIonSelectionPreprocessinginline
getGaussMu() constPrecursorIonSelectionPreprocessinginline
getGaussSigma() constPrecursorIonSelectionPreprocessinginline
getMasses(const String &acc) constPrecursorIonSelectionPreprocessing
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getProteinPeptideSequenceMap() constPrecursorIonSelectionPreprocessing
getProteinPTMap() constPrecursorIonSelectionPreprocessing
getProteinRTMap() constPrecursorIonSelectionPreprocessing
getProtMasses() constPrecursorIonSelectionPreprocessing
getPT(const String &prot_id, Size peptide_index)PrecursorIonSelectionPreprocessing
getRT(const String &prot_id, Size peptide_index)PrecursorIonSelectionPreprocessing
getRTProbability(const String &prot_id, Size peptide_index, Feature &feature)PrecursorIonSelectionPreprocessing
getRTProbability(double pred_rt, Feature &feature)PrecursorIonSelectionPreprocessing
getRTProbability_(double min_obs_rt, double max_obs_rt, double pred_rt)PrecursorIonSelectionPreprocessingprotected
getScanNumber_(double rt)PrecursorIonSelectionPreprocessingprotected
getSubsections() constDefaultParamHandler
getWeight(double mass)PrecursorIonSelectionPreprocessing
loadPreprocessedDB_(const String &path)PrecursorIonSelectionPreprocessingprotected
loadPreprocessing()PrecursorIonSelectionPreprocessing
masses_PrecursorIonSelectionPreprocessingprotected
mu_PrecursorIonSelectionPreprocessingprotected
operator=(const PrecursorIonSelectionPreprocessing &source)PrecursorIonSelectionPreprocessing
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandler
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
PrecursorIonSelectionPreprocessing()PrecursorIonSelectionPreprocessing
PrecursorIonSelectionPreprocessing(const PrecursorIonSelectionPreprocessing &source)PrecursorIonSelectionPreprocessing
prot_masses_PrecursorIonSelectionPreprocessingprotected
prot_peptide_seq_map_PrecursorIonSelectionPreprocessingprotected
pt_prot_map_PrecursorIonSelectionPreprocessingprotected
rt_prot_map_PrecursorIonSelectionPreprocessingprotected
savePreprocessedDB_(const String &db_path, const String &path)PrecursorIonSelectionPreprocessingprotected
savePreprocessedDBWithRT_(const String &db_path, const String &path)PrecursorIonSelectionPreprocessingprotected
sequences_PrecursorIonSelectionPreprocessingprotected
setFixedModifications(StringList &modifications)PrecursorIonSelectionPreprocessing
setGaussianParameters(double mu, double sigma)PrecursorIonSelectionPreprocessing
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
sigma_PrecursorIonSelectionPreprocessingprotected
subsections_DefaultParamHandlerprotected
updateMembers_() overridePrecursorIonSelectionPreprocessingprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")DefaultParamHandlerstatic
~DefaultParamHandler()DefaultParamHandlervirtual
~PrecursorIonSelectionPreprocessing() overridePrecursorIonSelectionPreprocessing