AverageLinkage.h

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// Copyright (c) 2002-2023, The OpenMS Team -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Mathias Walzer $
// $Authors: $
// --------------------------------------------------------------------------
//
#pragma once
 
#include <vector>
#include <set>
 
#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/DATASTRUCTURES/DistanceMatrix.h>
#include <OpenMS/COMPARISON/CLUSTERING/ClusterFunctor.h>
 
namespace OpenMS
{
  class OPENMS_DLLAPI AverageLinkage :
    public ClusterFunctor, public ProgressLogger
  {
public:
 
    AverageLinkage();
 
    AverageLinkage(const AverageLinkage & source);
 
    ~AverageLinkage() override;
 
    AverageLinkage & operator=(const AverageLinkage & source);
 
 
    void operator()(DistanceMatrix<float> & original_distance, std::vector<BinaryTreeNode> & cluster_tree, const float threshold = 1) const override;
 
    static ClusterFunctor * create();
 
    static const String getProductName();
 
  };
 
}