ConsensusMapNormalizerAlgorithmQuantile.h

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// Copyright (c) 2002-2023, The OpenMS Team -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Johannes Veit $
// $Authors: Johannes Junker $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/KERNEL/ConsensusMap.h>
 
namespace OpenMS
{
 
  class OPENMS_DLLAPI ConsensusMapNormalizerAlgorithmQuantile
  {
private:
    ConsensusMapNormalizerAlgorithmQuantile(const ConsensusMapNormalizerAlgorithmQuantile & copyin);
 
    ConsensusMapNormalizerAlgorithmQuantile & operator=(const ConsensusMapNormalizerAlgorithmQuantile & rhs);
 
public:
    ConsensusMapNormalizerAlgorithmQuantile();
 
    virtual ~ConsensusMapNormalizerAlgorithmQuantile();
 
    static void normalizeMaps(ConsensusMap & map);
 
    static void resample(const std::vector<double> & data_in, std::vector<double> & data_out, UInt n_resampling_points);
 
    static void extractIntensityVectors(const ConsensusMap & map, std::vector<std::vector<double> > & out_intensities);
 
    static void setNormalizedIntensityValues(const std::vector<std::vector<double> > & feature_ints, ConsensusMap & map);
  };
 
} // namespace OpenMS