DigestionEnzymeRNA.h

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// Copyright (c) 2002-2023, The OpenMS Team -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Hendrik Weisser $
// $Authors: Hendrik Weisser $
// --------------------------------------------------------------------------
//
 
#pragma once
 
#include <OpenMS/CHEMISTRY/DigestionEnzyme.h>
 
namespace OpenMS
{
  class OPENMS_DLLAPI DigestionEnzymeRNA: public DigestionEnzyme
  {
  public:
    void setCutsAfterRegEx(const String& value);
 
    String getCutsAfterRegEx() const;
 
    void setCutsBeforeRegEx(const String& value);
 
    String getCutsBeforeRegEx() const;
 
    void setThreePrimeGain(const String& value);
 
    String getThreePrimeGain() const;
 
    void setFivePrimeGain(const String& value);
 
    String getFivePrimeGain() const;
 
    bool setValueFromFile(const String& key, const String& value) override;
 
  protected:
    String three_prime_gain_;
    String five_prime_gain_;
    String cuts_after_regex_;
    String cuts_before_regex_;
  };
 
  typedef DigestionEnzymeRNA RNase;
}