MzDataFile.h

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// Copyright (c) 2002-2023, The OpenMS Team -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/FORMAT/XMLFile.h>
#include <OpenMS/FORMAT/OPTIONS/PeakFileOptions.h>
#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/KERNEL/Peak1D.h>
#include <OpenMS/FORMAT/HANDLERS/MzDataHandler.h>
#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/METADATA/DocumentIdentifier.h>
 
namespace OpenMS
{
  class OPENMS_DLLAPI MzDataFile :
    public Internal::XMLFile,
    public ProgressLogger
  {
  typedef PeakMap MapType;
 
public:
 
    MzDataFile();
    ~MzDataFile() override;
 
    PeakFileOptions & getOptions();
 
    const PeakFileOptions & getOptions() const;
 
    void setOptions(const PeakFileOptions &);
 
    void load(const String & filename, MapType & map);
 
    void store(const String & filename, const MapType & map) const;
 
    bool isSemanticallyValid(const String & filename, StringList & errors, StringList & warnings);
 
private:
 
    PeakFileOptions options_;
  };
 
} // namespace OpenMS