SimplePairFinder.h

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// Copyright (c) 2002-2023, The OpenMS Team -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: $
// --------------------------------------------------------------------------
 
 
#ifndef OPENMS_ANALYSIS_MAPMATCHING_SIMPLEPAIRFINDER_H
#define OPENMS_ANALYSIS_MAPMATCHING_SIMPLEPAIRFINDER_H
 
#include <OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h>
 
#define V_SimplePairFinder(bla) // std::cout << bla << std::endl;
 
namespace OpenMS
{
 
  class OPENMS_DLLAPI SimplePairFinder :
    public BaseGroupFinder
  {
public:
    typedef BaseGroupFinder Base;
 
    SimplePairFinder();
    ~SimplePairFinder() override
    {
    }
 
    static BaseGroupFinder * create()
    {
      return new SimplePairFinder();
    }
 
    static const String getProductName()
    {
      return "simple";
    }
 
    void run(const std::vector<ConsensusMap> & input_maps, ConsensusMap & result_map) override;
 
protected:
 
    //docu in base class
    void updateMembers_() override;
 
    double diff_exponent_[2];
 
    double diff_intercept_[2];
 
    double pair_min_quality_;
 
    double similarity_(ConsensusFeature const & left, ConsensusFeature const & right) const;
 
  }; // SimplePairFinder
 
} // namespace OpenMS
 
#endif  // OPENMS_ANALYSIS_MAPMATCHING_SimplePairFinder_H
 
/*
 
gnuplot history - how the plot was created - please do not delete this receipt
 
f(x,intercept,exponent)=1/(1+(abs(x)*intercept)**exponent)
set terminal postscript enhanced color
set output "choosingsimplepairfinderparams.ps"
set size ratio .3
plot [-3:3] [0:1] f(x,1,1), f(x,2,1), f(x,1,2), f(x,2,2)
 
*/