IDMergerAlgorithm Member List

This is the complete list of members for IDMergerAlgorithm, including all inherited members.

accessionEqual_(const ProteinHit &p1, const ProteinHit &p2)	IDMergerAlgorithm	inlineprivatestatic
accessionHash_(const ProteinHit &p)	IDMergerAlgorithm	inlineprivatestatic
check_defaults_	DefaultParamHandler	protected
checkOldRunConsistency_(const std::vector< ProteinIdentification > &protRuns, const String &experiment_type) const	IDMergerAlgorithm	private
checkOldRunConsistency_(const std::vector< ProteinIdentification > &protRuns, const ProteinIdentification &ref, const String &experiment_type) const	IDMergerAlgorithm	private
CMD enum value	ProgressLogger
collected_protein_hits_	IDMergerAlgorithm	private
copySearchParams_(const ProteinIdentification &from, ProteinIdentification &to)	IDMergerAlgorithm	privatestatic
current_logger_	ProgressLogger	mutableprotected
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
endProgress(UInt64 bytes_processed=0) const	ProgressLogger
equal_type typedef	IDMergerAlgorithm	private
error_name_	DefaultParamHandler	protected
file_origin_to_idx_	IDMergerAlgorithm	private
filled_	IDMergerAlgorithm	private
getDefaults() const	DefaultParamHandler
getLogType() const	ProgressLogger
getName() const	DefaultParamHandler
getNewIdentifier_() const	IDMergerAlgorithm	private
getParameters() const	DefaultParamHandler
getSubsections() const	DefaultParamHandler
GUI enum value	ProgressLogger
hash_type typedef	IDMergerAlgorithm	private
id_	IDMergerAlgorithm	private
IDMergerAlgorithm(const String &runIdentifier="merged")	IDMergerAlgorithm	explicit
insertProteinIDs_(std::vector< ProteinIdentification > &&old_protRuns)	IDMergerAlgorithm	private
insertRuns(std::vector< ProteinIdentification > &&prots, std::vector< PeptideIdentification > &&peps)	IDMergerAlgorithm
insertRuns(const std::vector< ProteinIdentification > &prots, const std::vector< PeptideIdentification > &peps)	IDMergerAlgorithm
last_invoke_	ProgressLogger	mutableprotected
LogType enum name	ProgressLogger
logTypeToFactoryName_(LogType type)	ProgressLogger	protectedstatic
movePepIDsAndRefProteinsToResultFaster_(std::vector< PeptideIdentification > &&pepIDs, std::vector< ProteinIdentification > &&old_protRuns)	IDMergerAlgorithm	private
nextProgress() const	ProgressLogger
NONE enum value	ProgressLogger
OpenMS::operator=(const DefaultParamHandler &rhs)	DefaultParamHandler
OpenMS::ProgressLogger::operator=(const ProgressLogger &other)	ProgressLogger
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
pep_result_	IDMergerAlgorithm	private
ProgressLogger()	ProgressLogger
ProgressLogger(const ProgressLogger &other)	ProgressLogger
prot_result_	IDMergerAlgorithm	private
recursion_depth_	ProgressLogger	protectedstatic
returnResultsAndClear(ProteinIdentification &prots, std::vector< PeptideIdentification > &peps)	IDMergerAlgorithm
setLogType(LogType type) const	ProgressLogger
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
setProgress(SignedSize value) const	ProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) const	ProgressLogger
subsections_	DefaultParamHandler	protected
type_	ProgressLogger	mutableprotected
updateAndMovePepIDs_(std::vector< PeptideIdentification > &&pepIDs, const std::map< String, Size > &runID_to_runIdx, const std::vector< StringList > &originFiles, bool annotate_origin)	IDMergerAlgorithm	private
updateMembers_()	DefaultParamHandler	protectedvirtual
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")	DefaultParamHandler	static
~DefaultParamHandler()	DefaultParamHandler	virtual
~ProgressLogger()	ProgressLogger	virtual