InternalCalibration Member List

This is the complete list of members for InternalCalibration, including all inherited members.

applyTransformation(std::vector< Precursor > &pcs, const MZTrafoModel &trafo)	InternalCalibration	static
applyTransformation(PeakMap::SpectrumType &spec, const IntList &target_mslvl, const MZTrafoModel &trafo)	InternalCalibration	static
applyTransformation(PeakMap &exp, const IntList &target_mslvl, const MZTrafoModel &trafo)	InternalCalibration	static
applyTransformation_(PeakMap::SpectrumType &spec, const MZTrafoModel &trafo)	InternalCalibration	protectedstatic
cal_data_	InternalCalibration	private
calibrate(PeakMap &exp, const IntList &target_mslvl, MZTrafoModel::MODELTYPE model_type, double rt_chunk, bool use_RANSAC, double post_ppm_median, double post_ppm_MAD, const String &file_models="", const String &file_models_plot="", const String &file_residuals="", const String &file_residuals_plot="", const String &rscript_executable="Rscript")	InternalCalibration
CMD enum value	ProgressLogger
current_logger_	ProgressLogger	mutableprotected
endProgress(UInt64 bytes_processed=0) const	ProgressLogger
fillCalibrants(const PeakMap &exp, const std::vector< InternalCalibration::LockMass > &ref_masses, double tol_ppm, bool lock_require_mono, bool lock_require_iso, CalibrationData &failed_lock_masses, bool verbose=true)	InternalCalibration
fillCalibrants(const FeatureMap &fm, double tol_ppm)	InternalCalibration
fillCalibrants(const std::vector< PeptideIdentification > &pep_ids, double tol_ppm)	InternalCalibration
fillID_(const PeptideIdentification &pep_id, const double tol_ppm, CalibrantStats_ &stats)	InternalCalibration	protected
fillIDs_(const std::vector< PeptideIdentification > &pep_ids, const double tol_ppm, CalibrantStats_ &stats)	InternalCalibration	protected
getCalibrationPoints() const	InternalCalibration
getLogType() const	ProgressLogger
GUI enum value	ProgressLogger
InternalCalibration()	InternalCalibration
isDecalibrated_(const PeptideIdentification &pep_id, const double mz_obs, const double tol_ppm, CalibrantStats_ &stats, double &mz_ref)	InternalCalibration	protected
last_invoke_	ProgressLogger	mutableprotected
LogType enum name	ProgressLogger
logTypeToFactoryName_(LogType type)	ProgressLogger	protectedstatic
nextProgress() const	ProgressLogger
NONE enum value	ProgressLogger
operator=(const ProgressLogger &other)	ProgressLogger
ProgressLogger()	ProgressLogger
ProgressLogger(const ProgressLogger &other)	ProgressLogger
recursion_depth_	ProgressLogger	protectedstatic
setLogType(LogType type) const	ProgressLogger
setProgress(SignedSize value) const	ProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) const	ProgressLogger
type_	ProgressLogger	mutableprotected
~InternalCalibration() override	InternalCalibration	inline
~ProgressLogger()	ProgressLogger	virtual