MapAlignmentAlgorithmTreeGuided Member List

This is the complete list of members for MapAlignmentAlgorithmTreeGuided, including all inherited members.

addPeptideSequences_(const std::vector< PeptideIdentification > &peptides, SeqAndRTList &peptide_rts, std::vector< double > &map_range, double feature_rt)	MapAlignmentAlgorithmTreeGuided	protectedstatic
align(std::vector< FeatureMap > &data, std::vector< TransformationDescription > &transformations)	MapAlignmentAlgorithmTreeGuided
align_algorithm_	MapAlignmentAlgorithmTreeGuided	protected
buildTree(std::vector< FeatureMap > &feature_maps, std::vector< BinaryTreeNode > &tree, std::vector< std::vector< double >> &maps_ranges)	MapAlignmentAlgorithmTreeGuided	static
check_defaults_	DefaultParamHandler	protected
CMD enum value	ProgressLogger
computeTrafosByOriginalRT(std::vector< FeatureMap > &feature_maps, FeatureMap &map_transformed, std::vector< TransformationDescription > &transformations, const std::vector< Size > &trafo_order)	MapAlignmentAlgorithmTreeGuided
computeTransformedFeatureMaps(std::vector< FeatureMap > &feature_maps, const std::vector< TransformationDescription > &transformations)	MapAlignmentAlgorithmTreeGuided	static
current_logger_	ProgressLogger	mutableprotected
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
endProgress(UInt64 bytes_processed=0) const	ProgressLogger
error_name_	DefaultParamHandler	protected
extractSeqAndRt_(const std::vector< FeatureMap > &feature_maps, std::vector< SeqAndRTList > &maps_seq_and_rt, std::vector< std::vector< double >> &maps_ranges)	MapAlignmentAlgorithmTreeGuided	protectedstatic
getDefaults() const	DefaultParamHandler
getLogType() const	ProgressLogger
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getSubsections() const	DefaultParamHandler
GUI enum value	ProgressLogger
last_invoke_	ProgressLogger	mutableprotected
LogType enum name	ProgressLogger
logTypeToFactoryName_(LogType type)	ProgressLogger	protectedstatic
MapAlignmentAlgorithmTreeGuided()	MapAlignmentAlgorithmTreeGuided
MapAlignmentAlgorithmTreeGuided(const MapAlignmentAlgorithmTreeGuided &)	MapAlignmentAlgorithmTreeGuided	private
model_param_	MapAlignmentAlgorithmTreeGuided	protected
model_type_	MapAlignmentAlgorithmTreeGuided	protected
nextProgress() const	ProgressLogger
NONE enum value	ProgressLogger
operator=(const MapAlignmentAlgorithmTreeGuided &)	MapAlignmentAlgorithmTreeGuided	private
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)	DefaultParamHandler
OpenMS::ProgressLogger::operator=(const ProgressLogger &other)	ProgressLogger
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
ProgressLogger()	ProgressLogger
ProgressLogger(const ProgressLogger &other)	ProgressLogger
recursion_depth_	ProgressLogger	protectedstatic
SeqAndRTList typedef	MapAlignmentAlgorithmTreeGuided	protected
setLogType(LogType type) const	ProgressLogger
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
setProgress(SignedSize value) const	ProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) const	ProgressLogger
subsections_	DefaultParamHandler	protected
treeGuidedAlignment(const std::vector< BinaryTreeNode > &tree, std::vector< FeatureMap > &feature_maps_transformed, std::vector< std::vector< double >> &maps_ranges, FeatureMap &map_transformed, std::vector< Size > &trafo_order)	MapAlignmentAlgorithmTreeGuided
type_	ProgressLogger	mutableprotected
updateMembers_() override	MapAlignmentAlgorithmTreeGuided	protectedvirtual
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")	DefaultParamHandler	static
~DefaultParamHandler()	DefaultParamHandler	virtual
~MapAlignmentAlgorithmTreeGuided() override	MapAlignmentAlgorithmTreeGuided
~ProgressLogger()	ProgressLogger	virtual