 |
OpenMS
|
This is the complete list of members for QTClusterFinder, including all inherited members.
| addClusterElements_(const Grid &grid, QTCluster &cluster) | QTClusterFinder | private |
| already_used_ | QTClusterFinder | private |
| BaseGroupFinder() | BaseGroupFinder | |
| BaseGroupFinder(const BaseGroupFinder &) | BaseGroupFinder | private |
| bin_tolerances_ | QTClusterFinder | private |
| check_defaults_ | DefaultParamHandler | protected |
| checkIds_(const std::vector< ConsensusMap > &maps) const | BaseGroupFinder | protected |
| CMD enum value | ProgressLogger | |
| computeClustering_(const Grid &grid, Heap &cluster_heads, std::vector< QTCluster::BulkData > &cluster_data, std::vector< Heap::handle_type > &handles, ElementMapping &element_mapping) | QTClusterFinder | private |
| create() | QTClusterFinder | inlinestatic |
| createConsensusFeature_(ConsensusFeature &feature, const double quality, const QTCluster::Elements &elements) | QTClusterFinder | private |
| current_logger_ | ProgressLogger | mutableprotected |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| DefaultParamHandler() | DefaultParamHandler | private |
| defaults_ | DefaultParamHandler | protected |
| defaultsToParam_() | DefaultParamHandler | protected |
| distIsOutlier_(double dist, double rt) | QTClusterFinder | private |
| ElementMapping typedef | QTClusterFinder | |
| endProgress(UInt64 bytes_processed=0) const | ProgressLogger | |
| error_name_ | DefaultParamHandler | protected |
| feature_distance_ | QTClusterFinder | private |
| getDefaults() const | DefaultParamHandler | |
| getDistance_(const OpenMS::GridFeature *left, const OpenMS::GridFeature *right) | QTClusterFinder | private |
| getLogType() const | ProgressLogger | |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getProductName() | QTClusterFinder | inlinestatic |
| getSubsections() const | DefaultParamHandler | |
| Grid typedef | QTClusterFinder | |
| GUI enum value | ProgressLogger | |
| Heap typedef | QTClusterFinder | |
| last_invoke_ | ProgressLogger | mutableprotected |
| LogType enum name | ProgressLogger | |
| logTypeToFactoryName_(LogType type) | ProgressLogger | protectedstatic |
| makeConsensusFeature_(Heap &cluster_heads, ConsensusFeature &feature, ElementMapping &element_mapping, const Grid &grid, const std::vector< Heap::handle_type > &handles) | QTClusterFinder | private |
| max_diff_mz_ | QTClusterFinder | private |
| max_diff_rt_ | QTClusterFinder | private |
| min_nr_diffs_per_bin_ | QTClusterFinder | private |
| min_score_ | QTClusterFinder | private |
| MZ enum value | QTClusterFinder | protected |
| nextProgress() const | ProgressLogger | |
| noID_penalty_ | QTClusterFinder | private |
| NONE enum value | ProgressLogger | |
| nr_partitions_ | QTClusterFinder | private |
| num_maps_ | QTClusterFinder | private |
| operator=(const BaseGroupFinder &) | BaseGroupFinder | private |
| OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger | |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
| PairDistances typedef | QTClusterFinder | |
| param_ | DefaultParamHandler | protected |
| ProgressLogger() | ProgressLogger | |
| ProgressLogger(const ProgressLogger &other) | ProgressLogger | |
| QTClusterFinder() | QTClusterFinder | |
| recursion_depth_ | ProgressLogger | protectedstatic |
| registerChildren() | BaseGroupFinder | static |
| removeFromElementMapping_(const QTCluster &cluster, ElementMapping &element_mapping) | QTClusterFinder | private |
| RT enum value | QTClusterFinder | protected |
| run(const std::vector< ConsensusMap > &input_maps, ConsensusMap &result_map) override | QTClusterFinder | virtual |
| run(const std::vector< FeatureMap > &input_maps, ConsensusMap &result_map) | QTClusterFinder | |
| run_(const std::vector< MapType > &input_maps, ConsensusMap &result_map) | QTClusterFinder | private |
| run_internal_(const std::vector< MapType > &input_maps, ConsensusMap &result_map, bool do_progress) | QTClusterFinder | private |
| setLogType(LogType type) const | ProgressLogger | |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| setParameters_(double max_intensity, double max_mz) | QTClusterFinder | private |
| setProgress(SignedSize value) const | ProgressLogger | |
| startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
| subsections_ | DefaultParamHandler | protected |
| type_ | ProgressLogger | mutableprotected |
| updateClustering_(ElementMapping &element_mapping, const Grid &grid, const QTCluster::Elements &elements, Heap &cluster_heads, const std::vector< Heap::handle_type > &handles, Size best_id) | QTClusterFinder | private |
| updateMembers_() | DefaultParamHandler | protectedvirtual |
| use_IDs_ | QTClusterFinder | private |
| warn_empty_defaults_ | DefaultParamHandler | protected |
| writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="") | DefaultParamHandler | static |
| ~BaseGroupFinder() override | BaseGroupFinder | |
| ~DefaultParamHandler() | DefaultParamHandler | virtual |
| ~ProgressLogger() | ProgressLogger | virtual |
| ~QTClusterFinder() override | QTClusterFinder |
1.9.1 
