OpenMS
DIAScoring Member List

This is the complete list of members for DIAScoring, including all inherited members.

check_defaults_DefaultParamHandlerprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
dia_by_ion_score(const SpectrumSequence &spectrum, AASequence &sequence, int charge, const RangeMobility &im_range, double &bseries_score, double &yseries_score) constDIAScoring
dia_byseries_intensity_min_DIAScoringprivate
dia_byseries_ppm_diff_DIAScoringprivate
dia_centroided_DIAScoringprivate
dia_extract_window_DIAScoringprivate
dia_extraction_ppm_DIAScoringprivate
dia_isotope_scores(const std::vector< TransitionType > &transitions, SpectrumSequence &spectrum, OpenSwath::IMRMFeature *mrmfeature, const RangeMobility &im_range, double &isotope_corr, double &isotope_overlap) constDIAScoring
dia_massdiff_score(const std::vector< TransitionType > &transitions, const SpectrumSequence &spectrum, const std::vector< double > &normalized_library_intensity, const RangeMobility &im_range, double &ppm_score, double &ppm_score_weighted, std::vector< double > &diff_ppm) constDIAScoring
dia_ms1_isotope_scores(double precursor_mz, const std::vector< SpectrumPtrType > &spectrum, RangeMobility &im_range, double &isotope_corr, double &isotope_overlap, const EmpiricalFormula &sum_formula) constDIAScoring
dia_ms1_isotope_scores_averagine(double precursor_mz, const SpectrumSequence &spectrum, int charge_state, RangeMobility &im_range, double &isotope_corr, double &isotope_overlap) constDIAScoring
dia_ms1_massdiff_score(double precursor_mz, const SpectrumSequence &spectrum, const RangeMobility &im_range, double &ppm_score) constDIAScoring
dia_nr_charges_DIAScoringprivate
dia_nr_isotopes_DIAScoringprivate
diaIsotopeScoresSub_(const std::vector< TransitionType > &transitions, const SpectrumSequence &spectrum, std::map< std::string, double > &intensities, const RangeMobility &im_range, double &isotope_corr, double &isotope_overlap) constDIAScoringprivate
DIAScoring()DIAScoring
DIAScoring(const DIAScoring &rhs)DIAScoringprivate
error_name_DefaultParamHandlerprotected
generatorDIAScoringprivate
getDefaults() constDefaultParamHandler
getFirstIsotopeRelativeIntensities_(const std::vector< TransitionType > &transitions, OpenSwath::IMRMFeature *mrmfeature, std::map< std::string, double > &intensities) constDIAScoringprivate
getIsotopeIntysFromExpSpec_(double precursor_mz, const SpectrumSequence &spectrum, int charge_state, const RangeMobility &im_range, std::vector< double > &isotopes_int) constDIAScoringprivate
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getSubsections() constDefaultParamHandler
largePeaksBeforeFirstIsotope_(const SpectrumSequence &spectrum, double mono_mz, double mono_int, int &nr_occurrences, double &max_ratio, const RangeMobility &im_range) constDIAScoringprivate
operator=(const DIAScoring &rhs)DIAScoringprivate
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandler
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
peak_before_mono_max_ppm_diff_DIAScoringprivate
score_with_isotopes(SpectrumSequence &spectrum, const std::vector< TransitionType > &transitions, const RangeMobility &im_range, double &dotprod, double &manhattan) constDIAScoring
scoreIsotopePattern_(const std::vector< double > &isotopes_int, double product_mz, int putative_fragment_charge) constDIAScoringprivate
scoreIsotopePattern_(const std::vector< double > &isotopes_int, const EmpiricalFormula &sum_formula) constDIAScoringprivate
scoreIsotopePattern_(const std::vector< double > &isotopes_int, const IsotopeDistribution &isotope_dist) constDIAScoringprivate
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
SpectrumPtrType typedefDIAScoringprivate
subsections_DefaultParamHandlerprotected
TransitionType typedefDIAScoringprivate
updateMembers_() overrideDIAScoringprivatevirtual
warn_empty_defaults_DefaultParamHandlerprotected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")DefaultParamHandlerstatic
~DefaultParamHandler()DefaultParamHandlervirtual
~DIAScoring() overrideDIAScoring