OpenMS
XQuestResultXMLHandler Member List

This is the complete list of members for XQuestResultXMLHandler, including all inherited members.

accessions_XQuestResultXMLHandlerprivate
ActionMode enum nameXMLHandler
addMetaValues_(MetaInfoInterface &meta_info_interface)XQuestResultXMLHandlerprivate
asBool_(const String &in) constXMLHandlerinlineprotected
asDateTime_(String date_string) constXMLHandlerinlineprotected
asDouble_(const String &in) constXMLHandlerinlineprotected
asFloat_(const String &in) constXMLHandlerinlineprotected
asInt_(const String &in) constXMLHandlerinlineprotected
asInt_(const XMLCh *in) constXMLHandlerinlineprotected
asUInt_(const String &in) constXMLHandlerinlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
characters(const XMLCh *const chars, const XMLSize_t length) overrideXMLHandler
charges_XQuestResultXMLHandlerprivate
checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids) constXMLHandler
cpep_id_XQuestResultXMLHandlerprivate
cpro_id_XQuestResultXMLHandlerprivate
cross_linker_name_XQuestResultXMLHandlerprivate
current_spectrum_search_XQuestResultXMLHandlerprivate
cv_terms_XMLHandlerprotected
cvParamToValue(const ControlledVocabulary &cv, const String &parent_tag, const String &accession, const String &name, const String &value, const String &unit_accession) constXMLHandler
cvParamToValue(const ControlledVocabulary &cv, const CVTerm &raw_term) constXMLHandler
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0)XMLHandlerprotected
decoy_string_XQuestResultXMLHandlerprivate
endElement(const XMLCh *const uri, const XMLCh *const local_name, const XMLCh *const qname) overrideXQuestResultXMLHandler
enzymesXQuestResultXMLHandlerstatic
enzymes_db_XQuestResultXMLHandlerprivate
equal_(const XMLCh *a, const XMLCh *b) constXMLHandlerinlineprotected
error(const xercesc::SAXParseException &exception) overrideXMLHandler
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandler
expectList_(const String &str) constXMLHandlerinlineprivate
extractDateTime_(const String &xquest_datetime_string, DateTime &date_time) constXQuestResultXMLHandlerinlineprivate
fatalError(const xercesc::SAXParseException &exception) overrideXMLHandler
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandler
file_XMLHandlerprotected
fromXSDString(const String &type, const String &value)XMLHandlerinlinestatic
getLinkPosition_(const xercesc::Attributes &attributes, std::pair< SignedSize, SignedSize > &pair)XQuestResultXMLHandlerprivate
getLoadDetail() constXMLHandlervirtual
getMaxScore() constXQuestResultXMLHandler
getMinScore() constXQuestResultXMLHandler
getNumberOfHits() constXQuestResultXMLHandler
is_openpepxl_XQuestResultXMLHandlerprivate
LD_ALLDATA enum valueXMLHandler
LD_COUNTS_WITHOPTIONS enum valueXMLHandler
LD_RAWCOUNTS enum valueXMLHandler
LOAD enum valueXMLHandler
load_detail_XMLHandlerprotected
LOADDETAIL enum nameXMLHandler
max_precursor_charge_XQuestResultXMLHandlerprivate
max_score_XQuestResultXMLHandlerprivate
min_precursor_charge_XQuestResultXMLHandlerprivate
min_score_XQuestResultXMLHandlerprivate
monthsXQuestResultXMLHandlerstatic
ms_run_path_XQuestResultXMLHandlerprivate
mz_heavy_XQuestResultXMLHandlerprivate
mz_light_XQuestResultXMLHandlerprivate
n_hits_XQuestResultXMLHandlerprivate
open_tags_XMLHandlerprotected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
pep_ids_XQuestResultXMLHandlerprivate
peptide_id_meta_values_XQuestResultXMLHandlerprivate
prot_ids_XQuestResultXMLHandlerprivate
reset()XMLHandler
rt_heavy_XQuestResultXMLHandlerprivate
rt_light_XQuestResultXMLHandlerprivate
setLoadDetail(const LOADDETAIL d)XMLHandlervirtual
setPeptideEvidence_(const String &prot_string, PeptideHit &pep_hit)XQuestResultXMLHandlerprivate
sm_XMLHandlerprotected
spectrum_index_heavy_XQuestResultXMLHandlerprivate
spectrum_index_light_XQuestResultXMLHandlerprivate
spectrum_input_file_XQuestResultXMLHandlerprivate
splitByMiddle(const String &input, const char separator)XQuestResultXMLHandlerstatic
splitByNth(const String &input, const char separator, const Size n)XQuestResultXMLHandlerstatic
startElement(const XMLCh *const uri, const XMLCh *const local_name, const XMLCh *const qname, const xercesc::Attributes &attributes) overrideXQuestResultXMLHandler
STORE enum valueXMLHandler
version_XMLHandlerprotected
warning(const xercesc::SAXParseException &exception) overrideXMLHandler
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandler
writeTo(std::ostream &os) overrideXQuestResultXMLHandlervirtual
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) constXMLHandlerprotected
writeXMLEscape(const String &to_escape)XMLHandlerinlinestatic
XMLHandler(const String &filename, const String &version)XMLHandler
XMLHandler()XMLHandlerprivate
XQuestResultXMLHandler(const String &filename, std::vector< PeptideIdentification > &pep_ids, std::vector< ProteinIdentification > &prot_ids)XQuestResultXMLHandler
XQuestResultXMLHandler(const std::vector< ProteinIdentification > &pro_id, const std::vector< PeptideIdentification > &pep_id, const String &filename, const String &version)XQuestResultXMLHandler
~XMLHandler() overrideXMLHandler
~XQuestResultXMLHandler() overrideXQuestResultXMLHandler