OpenMS
MSExperiment Member List

This is the complete list of members for MSExperiment, including all inherited members.

addChromatogram(const MSChromatogram &chromatogram)MSExperiment
addChromatogram(MSChromatogram &&chrom)MSExperiment
addMetaValues(const MetaInfoInterface &from)MetaInfoInterface
addSpectrum(const MSSpectrum &spectrum)MSExperiment
addSpectrum(MSSpectrum &&spectrum)MSExperiment
areaBegin(CoordinateType min_rt, CoordinateType max_rt, CoordinateType min_mz, CoordinateType max_mz, UInt ms_level=1)MSExperiment
areaBegin(const RangeManagerType &range, UInt ms_level=1)MSExperiment
areaBeginConst(CoordinateType min_rt, CoordinateType max_rt, CoordinateType min_mz, CoordinateType max_mz, UInt ms_level=1) constMSExperiment
areaBeginConst(const RangeManagerType &range, UInt ms_level=1) constMSExperiment
areaEnd()MSExperiment
areaEndConst() constMSExperiment
AreaIterator typedefMSExperiment
assign(const RangeManager< RangeBasesOther... > &rhs)RangeManager< RangeBases... >inline
assignUnsafe(const RangeManager< RangeBasesOther... > &rhs)RangeManager< RangeBases... >inline
Base typedefMSExperiment
begin() noexceptMSExperimentinline
begin() const noexceptMSExperimentinline
calculateTIC(float rt_bin_size=0, UInt ms_level=1) constMSExperiment
cbegin() const noexceptMSExperimentinline
cend() const noexceptMSExperimentinline
ChromatogramPeakT typedefMSExperiment
ChromatogramPeakType typedefMSExperiment
chromatograms_MSExperimentprotected
ChromatogramType typedefMSExperiment
clampTo(const RangeManager< RangeBasesOther... > &rhs)RangeManager< RangeBases... >inline
clampToUnsafe(const RangeManager< RangeBasesOther... > &rhs)RangeManager< RangeBases... >inline
clear(bool clear_meta_data)MSExperiment
RangeManagerContainer< RangeRT, RangeMZ, RangeIntensity, RangeMobility >::clear(const DIM_UNIT range)RangeManager< RangeBases... >inline
clearMetaDataArrays()MSExperiment
clearMetaInfo()MetaInfoInterface
clearRanges()RangeManager< RangeBases... >inline
comment_ExperimentalSettingsprotected
const_iterator typedefMSExperiment
ConstAreaIterator typedefMSExperiment
ConstIterator typedefMSExperiment
contacts_ExperimentalSettingsprotected
containsAll(const RangeManager< RangeBasesOther... > &rhs) constRangeManager< RangeBases... >inline
containsScanOfLevel(size_t ms_level) constMSExperiment
CoordinateType typedefMSExperiment
createIfNotExists_()MetaInfoInterfaceinlineprotected
createSpec_(PeakType::CoordinateType rt)MSExperimentprivate
createSpec_(PeakType::CoordinateType rt, const StringList &metadata_names)MSExperimentprivate
datetime_ExperimentalSettingsprotected
DocumentIdentifier()DocumentIdentifier
DocumentIdentifier(const DocumentIdentifier &)=defaultDocumentIdentifier
DocumentIdentifier(DocumentIdentifier &&)=defaultDocumentIdentifier
empty() const noexceptMSExperimentinline
end()MSExperimentinline
end() const noexceptMSExperimentinline
ExperimentalSettings()=defaultExperimentalSettings
ExperimentalSettings(const ExperimentalSettings &)=defaultExperimentalSettings
ExperimentalSettings(ExperimentalSettings &&)=defaultExperimentalSettings
extend(const RangeManager< RangeBasesOther... > &rhs)RangeManager< RangeBases... >inline
extendUnsafe(const RangeManager< RangeBasesOther... > &rhs)RangeManager< RangeBases... >inline
file_path_DocumentIdentifierprotected
file_type_DocumentIdentifierprotected
for_each_base_(Visitor &&visitor)RangeManager< RangeBases... >inlineprotected
for_each_base_(Visitor &&visitor) constRangeManager< RangeBases... >inlineprotected
fraction_identifier_ExperimentalSettingsprotected
get2DData(Container &cont) constMSExperimentinline
get2DPeakData(CoordinateType min_rt, CoordinateType max_rt, CoordinateType min_mz, CoordinateType max_mz, std::vector< float > &rt, std::vector< std::vector< float >> &mz, std::vector< std::vector< float >> &intensity) constMSExperimentinline
get2DPeakData(CoordinateType min_rt, CoordinateType max_rt, CoordinateType min_mz, CoordinateType max_mz, std::vector< float > &rt, std::vector< std::vector< float >> &mz, std::vector< std::vector< float >> &intensity, std::vector< std::vector< float >> &ion_mobility) constMSExperimentinline
get2DPeakData(CoordinateType min_rt, CoordinateType max_rt, CoordinateType min_mz, CoordinateType max_mz, std::vector< float > &rt, std::vector< float > &mz, std::vector< float > &intensity) constMSExperimentinline
get2DPeakDataIon(CoordinateType min_rt, CoordinateType max_rt, CoordinateType min_mz, CoordinateType max_mz, std::vector< float > &rt, std::vector< float > &mz, std::vector< float > &intensity, std::vector< float > &ion_mobility) constMSExperimentinline
getChromatogram(Size id)MSExperiment
getChromatograms() constMSExperiment
getChromatograms()MSExperiment
getClosestSpectrumInRT(const double RT) constMSExperiment
getClosestSpectrumInRT(const double RT)MSExperiment
getClosestSpectrumInRT(const double RT, UInt ms_level) constMSExperiment
getClosestSpectrumInRT(const double RT, UInt ms_level)MSExperiment
getComment() constExperimentalSettings
getContacts() constExperimentalSettings
getContacts()ExperimentalSettings
getDateTime() constExperimentalSettings
getExperimentalSettings() constMSExperiment
getExperimentalSettings()MSExperiment
getFractionIdentifier() constExperimentalSettings
getHPLC() constExperimentalSettings
getHPLC()ExperimentalSettings
getIdentifier() constDocumentIdentifier
getInstrument() constExperimentalSettings
getInstrument()ExperimentalSettings
getKeys(std::vector< String > &keys) constMetaInfoInterface
getKeys(std::vector< UInt > &keys) constMetaInfoInterface
getLoadedFilePath() constDocumentIdentifier
getLoadedFileType() constDocumentIdentifier
getMetaValue(const String &name) constMetaInfoInterface
getMetaValue(const String &name, const DataValue &default_value) constMetaInfoInterface
getMetaValue(UInt index) constMetaInfoInterface
getMetaValue(UInt index, const DataValue &default_value) constMetaInfoInterface
getMSLevels() constMSExperiment
getNrChromatograms() constMSExperiment
getNrSpectra() constMSExperiment
getPrecursorSpectrum(ConstIterator iterator) constMSExperiment
getPrecursorSpectrum(int zero_based_index) constMSExperiment
getPrimaryMSRunPath(StringList &toFill) constMSExperiment
getProteinIdentifications() constExperimentalSettings
getProteinIdentifications()ExperimentalSettings
getRange() constRangeManagerContainer< RangeRT, RangeMZ, RangeIntensity, RangeMobility >inline
getRange()RangeManagerContainer< RangeRT, RangeMZ, RangeIntensity, RangeMobility >inline
getRangeForDim(MSDim dim) constRangeManager< RangeBases... >inline
getRangeForDim(MSDim dim)RangeManager< RangeBases... >inline
getSample() constExperimentalSettings
getSample()ExperimentalSettings
getSize() constMSExperiment
getSourceFiles() constExperimentalSettings
getSourceFiles()ExperimentalSettings
getSpectra() constMSExperiment
getSpectra()MSExperiment
getSpectrum(Size id)MSExperiment
getSqlRunID() constMSExperiment
hasPeptideIdentifications() constMSExperiment
hasRange() constRangeManager< RangeBases... >inline
hasZeroIntensities(size_t ms_level) constMSExperiment
hplc_ExperimentalSettingsprotected
id_DocumentIdentifierprotected
IMBegin(CoordinateType im) constMSExperiment
IMEnd(CoordinateType im) constMSExperiment
instrument_ExperimentalSettingsprotected
IntensityType typedefMSExperiment
isIMFrame() constMSExperiment
isMetaEmpty() constMetaInfoInterface
isSorted(bool check_mz=true) constMSExperiment
Iterator typedefMSExperiment
iterator typedefMSExperiment
meta_MetaInfoInterfaceprotected
MetaInfoInterface()MetaInfoInterface
MetaInfoInterface(const MetaInfoInterface &rhs)MetaInfoInterface
MetaInfoInterface(MetaInfoInterface &&) noexceptMetaInfoInterface
metaRegistry()MetaInfoInterfacestatic
metaValueExists(const String &name) constMetaInfoInterface
metaValueExists(UInt index) constMetaInfoInterface
minSpanIfSingular(const double min_span)RangeManager< RangeBases... >inline
ms_levels_MSExperimentprotected
MSExperiment()MSExperiment
MSExperiment(const MSExperiment &source)MSExperiment
MSExperiment(MSExperiment &&)=defaultMSExperiment
operator!=(const MSExperiment &rhs) constMSExperiment
RangeManagerContainer< RangeRT, RangeMZ, RangeIntensity, RangeMobility >::operator!=(const RangeManager &rhs) constRangeManager< RangeBases... >inline
OpenMS::ExperimentalSettings::operator!=(const ExperimentalSettings &rhs) constExperimentalSettings
OpenMS::MetaInfoInterface::operator!=(const MetaInfoInterface &rhs) constMetaInfoInterface
operator=(const MSExperiment &source)MSExperiment
operator=(MSExperiment &&) &=defaultMSExperiment
operator=(const ExperimentalSettings &source)MSExperiment
OpenMS::ExperimentalSettings::operator=(ExperimentalSettings &&)=defaultExperimentalSettings
OpenMS::MetaInfoInterface::operator=(const MetaInfoInterface &rhs)MetaInfoInterface
OpenMS::MetaInfoInterface::operator=(MetaInfoInterface &&) noexceptMetaInfoInterface
OpenMS::DocumentIdentifier::operator=(const DocumentIdentifier &)=defaultDocumentIdentifier
OpenMS::DocumentIdentifier::operator=(DocumentIdentifier &&) &=defaultDocumentIdentifier
operator==(const MSExperiment &rhs) constMSExperiment
RangeManagerContainer< RangeRT, RangeMZ, RangeIntensity, RangeMobility >::operator==(const RangeManager &rhs) constRangeManager< RangeBases... >inline
OpenMS::ExperimentalSettings::operator==(const ExperimentalSettings &rhs) constExperimentalSettings
OpenMS::MetaInfoInterface::operator==(const MetaInfoInterface &rhs) constMetaInfoInterface
OpenMS::DocumentIdentifier::operator==(const DocumentIdentifier &rhs) constDocumentIdentifier
operator[](Size n)MSExperimentinline
operator[](Size n) constMSExperimentinline
PeakT typedefMSExperiment
PeakType typedefMSExperiment
printRange(std::ostream &out) constRangeManager< RangeBases... >inline
protein_identifications_ExperimentalSettingsprotected
pushInto(const RangeManager< RangeBasesOther... > &sandbox)RangeManager< RangeBases... >inline
pushIntoUnsafe(const RangeManager< RangeBasesOther... > &rhs)RangeManager< RangeBases... >inline
RangeManagerContainerType typedefMSExperiment
RangeManagerType typedefMSExperiment
removeMetaValue(const String &name)MetaInfoInterface
removeMetaValue(UInt index)MetaInfoInterface
reserve(Size n)MSExperimentinline
reserveSpaceChromatograms(Size s)MSExperiment
reserveSpaceSpectra(Size s)MSExperiment
reset()MSExperiment
resize(Size n)MSExperimentinline
RTBegin(CoordinateType rt) constMSExperiment
RTBegin(CoordinateType rt)MSExperiment
RTEnd(CoordinateType rt) constMSExperiment
RTEnd(CoordinateType rt)MSExperiment
sample_ExperimentalSettingsprotected
scaleBy(const double factor)RangeManager< RangeBases... >inline
set2DData(const Container &container)MSExperimentinline
set2DData(const Container &container, const StringList &store_metadata_names)MSExperimentinline
set2DData(const Container &container)MSExperimentinline
setChromatograms(const std::vector< MSChromatogram > &chromatograms)MSExperiment
setChromatograms(std::vector< MSChromatogram > &&chromatograms)MSExperiment
setComment(const String &comment)ExperimentalSettings
setContacts(const std::vector< ContactPerson > &contacts)ExperimentalSettings
setDateTime(const DateTime &date)ExperimentalSettings
setFractionIdentifier(const String &fraction_identifier)ExperimentalSettings
setHPLC(const HPLC &hplc)ExperimentalSettings
setIdentifier(const String &id)DocumentIdentifier
setInstrument(const Instrument &instrument)ExperimentalSettings
setLoadedFilePath(const String &file_name)DocumentIdentifier
setLoadedFileType(const String &file_name)DocumentIdentifier
setMetaValue(const String &name, const DataValue &value)MetaInfoInterface
setMetaValue(UInt index, const DataValue &value)MetaInfoInterface
setProteinIdentifications(const std::vector< ProteinIdentification > &protein_identifications)ExperimentalSettings
setSample(const Sample &sample)ExperimentalSettings
setSourceFiles(const std::vector< SourceFile > &source_files)ExperimentalSettings
setSpectra(const std::vector< MSSpectrum > &spectra)MSExperiment
setSpectra(std::vector< MSSpectrum > &&spectra)MSExperiment
setSqlRunID(UInt64 id)MSExperiment
size() const noexceptMSExperimentinline
sortChromatograms(bool sort_rt=true)MSExperiment
sortSpectra(bool sort_mz=true)MSExperiment
source_files_ExperimentalSettingsprotected
spectra_MSExperimentprotected
SpectrumType typedefMSExperiment
static_for_each_base_(Visitor &&visitor)RangeManager< RangeBases... >inlineprotectedstatic
swap(MSExperiment &from)MSExperiment
OpenMS::ExperimentalSettings::swap(MetaInfoInterface &rhs)MetaInfoInterface
OpenMS::ExperimentalSettings::swap(DocumentIdentifier &from)DocumentIdentifier
ThisRangeType typedefRangeManagerContainer< RangeRT, RangeMZ, RangeIntensity, RangeMobility >
total_size_MSExperimentprotected
updateRanges() overrideMSExperimentvirtual
updateRanges(Int ms_level)MSExperiment
value_type typedefMSExperiment
~DocumentIdentifier()DocumentIdentifiervirtual
~ExperimentalSettings() overrideExperimentalSettings
~MetaInfoInterface()MetaInfoInterface
~MSExperiment() overrideMSExperiment
~RangeManagerContainer()=defaultRangeManagerContainer< RangeRT, RangeMZ, RangeIntensity, RangeMobility >virtual