OpenMS
MapAlignmentAlgorithmIdentification Member List

This is the complete list of members for MapAlignmentAlgorithmIdentification, including all inherited members.

align(std::vector< DataType > &data, std::vector< TransformationDescription > &transformations, Int reference_index=-1)MapAlignmentAlgorithmIdentificationinline
better_MapAlignmentAlgorithmIdentificationprotected
check_defaults_DefaultParamHandlerprotected
checkParameters_(const Size runs)MapAlignmentAlgorithmIdentificationprotected
CMD enum valueProgressLogger
computeMedians_(SeqToList &rt_data, SeqToValue &medians, bool sorted=false)MapAlignmentAlgorithmIdentificationprotected
computeTransformations_(std::vector< SeqToList > &rt_data, std::vector< TransformationDescription > &transforms, bool sorted=false)MapAlignmentAlgorithmIdentificationprotected
current_logger_ProgressLoggermutableprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
endProgress(UInt64 bytes_processed=0) constProgressLogger
error_name_DefaultParamHandlerprotected
getDefaults() constDefaultParamHandler
getLogType() constProgressLogger
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getReference_()MapAlignmentAlgorithmIdentificationprotected
getRetentionTimes_(std::vector< PeptideIdentification > &peptides, SeqToList &rt_data)MapAlignmentAlgorithmIdentificationprotected
getRetentionTimes_(IdentificationData &id_data, SeqToList &rt_data)MapAlignmentAlgorithmIdentificationprotected
getRetentionTimes_(PeakMap &experiment, SeqToList &rt_data)MapAlignmentAlgorithmIdentificationprotected
getRetentionTimes_(MapType &features, SeqToList &rt_data)MapAlignmentAlgorithmIdentificationinlineprotected
getSubsections() constDefaultParamHandler
GUI enum valueProgressLogger
handleIdDataScoreType_(const IdentificationData &id_data)MapAlignmentAlgorithmIdentificationprotected
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
MapAlignmentAlgorithmIdentification()MapAlignmentAlgorithmIdentification
MapAlignmentAlgorithmIdentification(const MapAlignmentAlgorithmIdentification &)MapAlignmentAlgorithmIdentificationprivate
min_run_occur_MapAlignmentAlgorithmIdentificationprotected
min_score_MapAlignmentAlgorithmIdentificationprotected
nextProgress() constProgressLogger
NONE enum valueProgressLogger
operator=(const MapAlignmentAlgorithmIdentification &)MapAlignmentAlgorithmIdentificationprivate
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandler
OpenMS::ProgressLogger::operator=(const ProgressLogger &other)ProgressLogger
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
recursion_depth_ProgressLoggerprotectedstatic
reference_MapAlignmentAlgorithmIdentificationprotected
reference_index_MapAlignmentAlgorithmIdentificationprotected
score_cutoff_MapAlignmentAlgorithmIdentificationprotected
score_type_MapAlignmentAlgorithmIdentificationprotected
SeqToList typedefMapAlignmentAlgorithmIdentificationprotected
SeqToValue typedefMapAlignmentAlgorithmIdentificationprotected
setLogger(ProgressLoggerImpl *logger)ProgressLogger
setLogType(LogType type) constProgressLogger
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setProgress(SignedSize value) constProgressLogger
setReference(DataType &data)MapAlignmentAlgorithmIdentificationinline
startProgress(SignedSize begin, SignedSize end, const String &label) constProgressLogger
subsections_DefaultParamHandlerprotected
type_ProgressLoggermutableprotected
updateMembers_()DefaultParamHandlerprotectedvirtual
use_adducts_MapAlignmentAlgorithmIdentificationprotected
use_feature_rt_MapAlignmentAlgorithmIdentificationprotected
warn_empty_defaults_DefaultParamHandlerprotected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")DefaultParamHandlerstatic
~DefaultParamHandler()DefaultParamHandlervirtual
~MapAlignmentAlgorithmIdentification() overrideMapAlignmentAlgorithmIdentification
~ProgressLogger()ProgressLoggervirtual