OpenMS
OpenSwathScoring Member List

This is the complete list of members for OpenSwathScoring, including all inherited members.

add_up_spectra_OpenSwathScoringprivate
calculateChromatographicIdScores(OpenSwath::IMRMFeature *imrmfeature, const std::vector< std::string > &native_ids_identification, const std::vector< std::string > &native_ids_detection, std::vector< OpenSwath::ISignalToNoisePtr > &signal_noise_estimators, OpenSwath_Ind_Scores &scores) constOpenSwathScoring
calculateChromatographicScores(OpenSwath::IMRMFeature *imrmfeature, const std::vector< std::string > &native_ids, const std::vector< std::string > &precursor_ids, const std::vector< double > &normalized_library_intensity, std::vector< OpenSwath::ISignalToNoisePtr > &signal_noise_estimators, OpenSwath_Scores &scores) constOpenSwathScoring
calculateDIAIdScores(OpenSwath::IMRMFeature *imrmfeature, const TransitionType &transition, const std::vector< OpenSwath::SwathMap > &swath_maps, RangeMobility &range_im, const OpenMS::DIAScoring &diascoring, OpenSwath_Scores &scores)OpenSwathScoring
calculateDIAScores(OpenSwath::IMRMFeature *imrmfeature, const std::vector< TransitionType > &transitions, const std::vector< OpenSwath::SwathMap > &swath_maps, const OpenSwath::SpectrumAccessPtr &ms1_map, const OpenMS::DIAScoring &diascoring, const CompoundType &compound, OpenSwath_Scores &scores, std::vector< double > &mzerror_ppm, const double drift_target, const RangeMobility &range_im)OpenSwathScoring
calculateLibraryScores(OpenSwath::IMRMFeature *imrmfeature, const std::vector< TransitionType > &transitions, const CompoundType &compound, const double normalized_feature_rt, OpenSwath_Scores &scores)OpenSwathScoring
calculatePrecursorDIAScores(const OpenSwath::SpectrumAccessPtr &ms1_map, const OpenMS::DIAScoring &diascoring, double precursor_mz, double rt, const CompoundType &compound, RangeMobility im_range, OpenSwath_Scores &scores)OpenSwathScoring
CompoundType typedefOpenSwathScoringprivate
fetchSpectrumSwath(std::vector< OpenSwath::SwathMap > swath_maps, double RT, int nr_spectra_to_add, const RangeMobility &im_range)OpenSwathScoring
fetchSpectrumSwath(OpenSwath::SpectrumAccessPtr swath_map, double RT, int nr_spectra_to_add, const RangeMobility &im_range)OpenSwathScoring
getNormalized_library_intensities_(const std::vector< TransitionType > &transitions, std::vector< double > &normalized_library_intensity)OpenSwathScoring
im_drift_extra_pcnt_OpenSwathScoringprivate
initialize(double rt_normalization_factor, int add_up_spectra, double spacing_for_spectra_resampling, const double drift_extra, const OpenSwath_Scores_Usage &su, const std::string &spectrum_addition_method, bool use_ms1_ion_mobility)OpenSwathScoring
ION_MOBILITY_DESCRIPTIONOpenSwathScoringprivate
OpenSwathScoring()OpenSwathScoring
rt_normalization_factor_OpenSwathScoringprivate
spacing_for_spectra_resampling_OpenSwathScoringprivate
spectra_addition_method_OpenSwathScoringprivate
SpectrumAdditionMethod enum nameOpenSwathScoringprivate
su_OpenSwathScoringprivate
TransitionType typedefOpenSwathScoringprivate
use_ms1_ion_mobility_OpenSwathScoringprivate
~OpenSwathScoring()OpenSwathScoring