addCompound(const Compound &rhs) | TargetedExperiment | |
addContact(const Contact &contact) | TargetedExperiment | |
addCV(const CV &cv) | TargetedExperiment | |
addExcludeTarget(const IncludeExcludeTarget &target) | TargetedExperiment | |
addIncludeTarget(const IncludeExcludeTarget &target) | TargetedExperiment | |
addInstrument(const Instrument &instrument) | TargetedExperiment | |
addPeptide(const Peptide &rhs) | TargetedExperiment | |
addProtein(const Protein &protein) | TargetedExperiment | |
addPublication(const Publication &publication) | TargetedExperiment | |
addSoftware(const Software &software) | TargetedExperiment | |
addSourceFile(const SourceFile &source_file) | TargetedExperiment | |
addTargetCVTerm(const CVTerm &cv_term) | TargetedExperiment | |
addTransition(const ReactionMonitoringTransition &transition) | TargetedExperiment | |
clear(bool clear_meta_data) | TargetedExperiment | |
Compound typedef | TargetedExperiment | |
compound_reference_map_ | TargetedExperiment | mutableprotected |
compound_reference_map_dirty_ | TargetedExperiment | mutableprotected |
CompoundReferenceMapType typedef | TargetedExperiment | |
compounds_ | TargetedExperiment | protected |
Contact typedef | TargetedExperiment | |
contacts_ | TargetedExperiment | protected |
containsInvalidReferences() const | TargetedExperiment | |
createCompoundReferenceMap_() const | TargetedExperiment | protected |
createPeptideReferenceMap_() const | TargetedExperiment | protected |
createProteinReferenceMap_() const | TargetedExperiment | protected |
CV typedef | TargetedExperiment | |
cvs_ | TargetedExperiment | protected |
exclude_targets_ | TargetedExperiment | protected |
getCompoundByRef(const String &ref) const | TargetedExperiment | |
getCompounds() const | TargetedExperiment | |
getContacts() const | TargetedExperiment | |
getCVs() const | TargetedExperiment | |
getExcludeTargets() const | TargetedExperiment | |
getIncludeTargets() const | TargetedExperiment | |
getInstruments() const | TargetedExperiment | |
getPeptideByRef(const String &ref) const | TargetedExperiment | |
getPeptides() const | TargetedExperiment | |
getProteinByRef(const String &ref) const | TargetedExperiment | |
getProteins() const | TargetedExperiment | |
getPublications() const | TargetedExperiment | |
getSoftware() const | TargetedExperiment | |
getSourceFiles() const | TargetedExperiment | |
getSummary() const | TargetedExperiment | |
getTargetCVTerms() const | TargetedExperiment | |
getTransitions() const | TargetedExperiment | |
hasCompound(const String &ref) const | TargetedExperiment | |
hasPeptide(const String &ref) const | TargetedExperiment | |
hasProtein(const String &ref) const | TargetedExperiment | |
include_targets_ | TargetedExperiment | protected |
Instrument typedef | TargetedExperiment | |
instruments_ | TargetedExperiment | protected |
Interpretation typedef | TargetedExperiment | |
IonType typedef | TargetedExperiment | |
operator!=(const TargetedExperiment &rhs) const | TargetedExperiment | |
operator+(const TargetedExperiment &rhs) const | TargetedExperiment | |
operator+=(const TargetedExperiment &rhs) | TargetedExperiment | |
operator+=(TargetedExperiment &&rhs) | TargetedExperiment | |
operator=(const TargetedExperiment &rhs) | TargetedExperiment | |
operator=(TargetedExperiment &&rhs) noexcept | TargetedExperiment | |
operator==(const TargetedExperiment &rhs) const | TargetedExperiment | |
Peptide typedef | TargetedExperiment | |
peptide_reference_map_ | TargetedExperiment | mutableprotected |
peptide_reference_map_dirty_ | TargetedExperiment | mutableprotected |
PeptideReferenceMapType typedef | TargetedExperiment | |
peptides_ | TargetedExperiment | protected |
Prediction typedef | TargetedExperiment | |
Protein typedef | TargetedExperiment | |
protein_reference_map_ | TargetedExperiment | mutableprotected |
protein_reference_map_dirty_ | TargetedExperiment | mutableprotected |
ProteinReferenceMapType typedef | TargetedExperiment | |
proteins_ | TargetedExperiment | protected |
Publication typedef | TargetedExperiment | |
publications_ | TargetedExperiment | protected |
RetentionTime typedef | TargetedExperiment | |
setCompounds(const std::vector< Compound > &rhs) | TargetedExperiment | |
setContacts(const std::vector< Contact > &contacts) | TargetedExperiment | |
setCVs(const std::vector< CV > &cvs) | TargetedExperiment | |
setExcludeTargets(const std::vector< IncludeExcludeTarget > &targets) | TargetedExperiment | |
setIncludeTargets(const std::vector< IncludeExcludeTarget > &targets) | TargetedExperiment | |
setInstruments(const std::vector< Instrument > &instruments) | TargetedExperiment | |
setPeptides(const std::vector< Peptide > &rhs) | TargetedExperiment | |
setPeptides(std::vector< Peptide > &&rhs) | TargetedExperiment | |
setProteins(const std::vector< Protein > &proteins) | TargetedExperiment | |
setProteins(std::vector< Protein > &&proteins) | TargetedExperiment | |
setPublications(const std::vector< Publication > &publications) | TargetedExperiment | |
setSoftware(const std::vector< Software > &software) | TargetedExperiment | |
setSourceFiles(const std::vector< SourceFile > &source_files) | TargetedExperiment | |
setTargetCVTerms(const CVTermList &cv_terms) | TargetedExperiment | |
setTargetMetaValue(const String &name, const DataValue &value) | TargetedExperiment | |
setTransitions(const std::vector< ReactionMonitoringTransition > &transitions) | TargetedExperiment | |
setTransitions(std::vector< ReactionMonitoringTransition > &&transitions) | TargetedExperiment | |
software_ | TargetedExperiment | protected |
sortTransitionsByName() | TargetedExperiment | |
sortTransitionsByProductMZ() | TargetedExperiment | |
source_files_ | TargetedExperiment | protected |
TargetedExperiment() | TargetedExperiment | |
TargetedExperiment(const TargetedExperiment &rhs) | TargetedExperiment | |
TargetedExperiment(TargetedExperiment &&rhs) noexcept | TargetedExperiment | |
targets_ | TargetedExperiment | protected |
Transition typedef | TargetedExperiment | |
transitions_ | TargetedExperiment | protected |
~TargetedExperiment() | TargetedExperiment | virtual |