OpenMS
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This application converts several OpenMS XML formats (featureXML, consensusXML, and idXML) to mzTab.
pot. predecessor tools | → MzTabExporter → | potential successor tools |
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Any tool producing one of the input formats | External tools (MS Excel, OpenOffice, Notepad) |
See the mzTab specification for details on the format.
The command line parameters of this tool are:
MzTabExporter -- Exports various XML formats to an mzTab file. Full documentation: http://www.openms.de/doxygen/release/3.3.0/html/TOPP_MzTabExporter.html Version: 3.3.0 Dec 21 2024, 15:25:20, Revision: 35c5e65 To cite OpenMS: + Pfeuffer, J., Bielow, C., Wein, S. et al.. OpenMS 3 enables reproducible analysis of large-scale mass spec trometry data. Nat Methods (2024). doi:10.1038/s41592-024-02197-7. Usage: MzTabExporter <options> Options (mandatory options marked with '*'): -in <file> Input files used to generate the mzTab file. (valid formats: 'featureXML', 'consensusX ML', 'idXML', 'mzid') -out <file>* Output file (mzTab) (valid formats: 'mzTab') -opt_columns <mods> Add optional columns which are not part of the mzTab standard. (default: '[subfeatures ]') (valid: 'subfeatures') Common TOPP options: -ini <file> Use the given TOPP INI file -threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1') -write_ini <file> Writes the default configuration file --help Shows options --helphelp Shows all options (including advanced)
INI file documentation of this tool: