OpenMS
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Removes all peaks below an intensity threshold.
pot. predecessor tools | → SpectraFilter → | pot. successor tools |
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PeakPickerHiRes | any tool operating on MS peak data (in mzML format) |
The command line parameters of this tool are:
SpectraFilterThresholdMower -- Applies thresholdfilter to peak spectra. Full documentation: http://www.openms.de/doxygen/release/3.3.0/html/TOPP_SpectraFilterThresholdMower.html Version: 3.3.0 Dec 21 2024, 15:25:20, Revision: 35c5e65 To cite OpenMS: + Pfeuffer, J., Bielow, C., Wein, S. et al.. OpenMS 3 enables reproducible analysis of large-scale mass spec trometry data. Nat Methods (2024). doi:10.1038/s41592-024-02197-7. Usage: SpectraFilterThresholdMower <options> This tool has algorithm parameters that are not shown here! Please check the ini file for a detailed descript ion or use the --helphelp option Options (mandatory options marked with '*'): -in <file>* Input file (valid formats: 'mzML') -out <file>* Output file (valid formats: 'mzML') Common TOPP options: -ini <file> Use the given TOPP INI file -threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1') -write_ini <file> Writes the default configuration file --help Shows options --helphelp Shows all options (including advanced) The following configuration subsections are valid: - algorithm Algorithm parameter subsection. You can write an example INI file using the '-write_ini' option. Documentation of subsection parameters can be found in the doxygen documentation or the INIFileEditor. For more information, please consult the online documentation for this tool: - http://www.openms.de/doxygen/release/3.3.0/html/TOPP_SpectraFilterThresholdMower.html
INI file documentation of this tool: