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XQuestScores Member List

This is the complete list of members for XQuestScores, including all inherited members.

logOccupancyProb(const PeakSpectrum &theoretical_spec, const Size matched_size, double fragment_mass_tolerance, bool fragment_mass_tolerance_unit_ppm)XQuestScoresstatic
matchedCurrentChain(const std::vector< std::pair< Size, Size > > &matched_spec_linear, const std::vector< std::pair< Size, Size > > &matched_spec_xlinks, const PeakSpectrum &spectrum_linear_peaks, const PeakSpectrum &spectrum_xlink_peaks)XQuestScoresstatic
matchOddsScore(const PeakSpectrum &theoretical_spec, const Size matched_size, double fragment_mass_tolerance, bool fragment_mass_tolerance_unit_ppm, bool is_xlink_spectrum=false, Size n_charges=1)XQuestScoresstatic
matchOddsScoreSimpleSpec(const std::vector< SimpleTSGXLMS::SimplePeak > &theoretical_spec, const Size matched_size, double fragment_mass_tolerance, bool fragment_mass_tolerance_unit_ppm, bool is_xlink_spectrum=false, Size n_charges=1)XQuestScoresstatic
preScore(Size matched_alpha, Size ions_alpha, Size matched_beta, Size ions_beta)XQuestScoresstatic
preScore(Size matched_alpha, Size ions_alpha)XQuestScoresstatic
totalMatchedCurrent(const std::vector< std::pair< Size, Size > > &matched_spec_linear_alpha, const std::vector< std::pair< Size, Size > > &matched_spec_linear_beta, const std::vector< std::pair< Size, Size > > &matched_spec_xlinks_alpha, const std::vector< std::pair< Size, Size > > &matched_spec_xlinks_beta, const PeakSpectrum &spectrum_linear_peaks, const PeakSpectrum &spectrum_xlink_peaks)XQuestScoresstatic
weightedTICScore(Size alpha_size, Size beta_size, double intsum_alpha, double intsum_beta, double total_current, bool type_is_cross_link)XQuestScoresstatic
weightedTICScoreXQuest(Size alpha_size, Size beta_size, double intsum_alpha, double intsum_beta, double total_current, bool type_is_cross_link)XQuestScoresstatic
xCorrelation(const PeakSpectrum &spec1, const PeakSpectrum &spec2, Int maxshift, double tolerance)XQuestScoresstatic
xCorrelationPrescore(const PeakSpectrum &spec1, const PeakSpectrum &spec2, double tolerance)XQuestScoresstatic