PeakGroup Member List

This is the complete list of members for PeakGroup, including all inherited members.

avg_da_error_	PeakGroup	private
avg_ppm_error_	PeakGroup	private
back()	PeakGroup
begin() const noexcept	PeakGroup
begin() noexcept	PeakGroup
charge_score_	PeakGroup	private
clear_()	PeakGroup	private
empty() const	PeakGroup
end() const noexcept	PeakGroup
end() noexcept	PeakGroup
findex_	PeakGroup	private
getAbsChargeRange() const	PeakGroup
getAvgDaError() const	PeakGroup
getAvgPPMError() const	PeakGroup
getChargeIntensity(int abs_charge) const	PeakGroup
getChargeIsotopeCosine(int abs_charge) const	PeakGroup
getChargeScore() const	PeakGroup
getChargeSNR(int abs_charge) const	PeakGroup
getDaError_(const LogMzPeak &p) const	PeakGroup	private
getDLVector(const MSSpectrum &spec, const Size charge_count, const Size isotope_count, const FLASHHelperClasses::PrecalculatedAveragine &avg, double tol)	PeakGroup
getFeatureIndex() const	PeakGroup
getIndex() const	PeakGroup
getIntensity() const	PeakGroup
getIsotopeCosine() const	PeakGroup
getIsotopeDaDistance() const	PeakGroup
getIsotopeIntensities() const	PeakGroup
getMassErrors(bool ppm=true) const	PeakGroup
getMinNegativeIsotopeIndex() const	PeakGroup
getMonoMass() const	PeakGroup
getMzRange(int abs_charge) const	PeakGroup
getNoisePeakPower_(const std::vector< LogMzPeak > &noisy_peaks, int z, double tol) const	PeakGroup	private
getNoisyPeaks(const MSSpectrum &spec, double tol, const FLASHHelperClasses::PrecalculatedAveragine &avg) const	PeakGroup
getPeakOccupancy() const	PeakGroup
getPerIsotopeIntensities_(std::vector< float > &intensities, int &min_isotope_index, int &max_isotope_index, int abs_charge, int min_negative_isotope_index, double tol)	PeakGroup	private
getPPMError_(const LogMzPeak &p) const	PeakGroup	private
getQscore() const	PeakGroup
getQscore2D() const	PeakGroup
getQvalue() const	PeakGroup
getRepAbsCharge() const	PeakGroup
getRepMzRange() const	PeakGroup
getScanNumber() const	PeakGroup
getSNR() const	PeakGroup
getTargetDecoyType() const	PeakGroup
index_	PeakGroup	private
intensity_	PeakGroup	private
is_positive_	PeakGroup	private
is_targeted_	PeakGroup	private
iso_da_distance_	PeakGroup	private
isotope_cosine_score_	PeakGroup	private
isPositive() const	PeakGroup
isTargeted() const	PeakGroup
LogMzPeak typedef	PeakGroup	private
logMzpeaks_	PeakGroup	private
max_abs_charge_	PeakGroup	private
max_snr_abs_charge_	PeakGroup	private
min_abs_charge_	PeakGroup	private
min_negative_isotope_index_	PeakGroup	private
monoisotopic_mass_	PeakGroup	private
negative_iso_peaks_	PeakGroup	private
noise_decoy enum value	PeakGroup
operator<(const PeakGroup &a) const	PeakGroup
operator=(const PeakGroup &t)=default	PeakGroup
operator==(const PeakGroup &a) const	PeakGroup
operator>(const PeakGroup &a) const	PeakGroup
operator[](Size i) const	PeakGroup
PeakGroup()=default	PeakGroup
PeakGroup(int min_abs_charge, int max_abs_charge, bool is_positive)	PeakGroup	explicit
PeakGroup(const PeakGroup &)=default	PeakGroup
PeakGroup(PeakGroup &&other)=default	PeakGroup
per_charge_cos_	PeakGroup	private
per_charge_int_	PeakGroup	private
per_charge_noise_pwr_	PeakGroup	private
per_charge_snr_	PeakGroup	private
per_charge_sum_signal_squared_	PeakGroup	private
per_isotope_int_	PeakGroup	private
PrecalculatedAveragine typedef	PeakGroup	private
push_back(const FLASHHelperClasses::LogMzPeak &pg)	PeakGroup
qscore2D_	PeakGroup	private
qscore_	PeakGroup	private
qvalue_	PeakGroup	private
recruitAllPeaksInSpectrum(const MSSpectrum &spec, double tol, const FLASHHelperClasses::PrecalculatedAveragine &avg, double mono_mass, bool renew_signal_peaks=true)	PeakGroup
reserve(Size n)	PeakGroup
scan_number_	PeakGroup	private
setAbsChargeRange(int min_abs_charge, int max_abs_charge)	PeakGroup
setAvgPPMError(float error)	PeakGroup
setChargeIsotopeCosine(int abs_charge, float cos)	PeakGroup
setChargeScore(float charge_score)	PeakGroup
setChargeSNR(int abs_charge, float c_snr)	PeakGroup
setFeatureIndex(uint findex)	PeakGroup
setIndex(uint i)	PeakGroup
setIsotopeCosine(float cos)	PeakGroup
setIsotopeDaDistance(double d)	PeakGroup
setMonoisotopicMass(double mono_mass)	PeakGroup
setQscore(double qscore)	PeakGroup
setQscore2D(double fqscore)	PeakGroup
setQvalue(double q)	PeakGroup
setRepAbsCharge(int max_snr_abs_charge)	PeakGroup
setScanNumber(int scan_number)	PeakGroup
setSNR(float snr)	PeakGroup
setTargetDecoyType(PeakGroup::TargetDecoyType index)	PeakGroup
setTargeted()	PeakGroup
signal_decoy enum value	PeakGroup
size() const noexcept	PeakGroup
snr_	PeakGroup	private
sort()	PeakGroup
swap(std::vector< FLASHHelperClasses::LogMzPeak > &x)	PeakGroup
target enum value	PeakGroup
target_decoy_type_	PeakGroup	private
TargetDecoyType enum name	PeakGroup
updateAvgMassError_()	PeakGroup	private
updateChargeFitScoreAndChargeIntensities_(bool is_low_charge)	PeakGroup	private
updateChargeRange_()	PeakGroup	private
updateMonoMassAndIsotopeIntensities(double tol)	PeakGroup
updatePerChargeCos_(const FLASHHelperClasses::PrecalculatedAveragine &avg, double tol)	PeakGroup	private
updatePerChargeInformation_(const std::vector< LogMzPeak > &noisy_peaks, double tol, bool is_last)	PeakGroup	private
updateQscore(const std::vector< LogMzPeak > &noisy_peaks, const FLASHHelperClasses::PrecalculatedAveragine &avg, double min_cos, double tol, bool is_low_charge, const std::vector< double > &excluded_masses, bool is_last=false)	PeakGroup
updateSNR_(float mul_factor)	PeakGroup	private
~PeakGroup()=default	PeakGroup