CometNativeIDRemapper.h File Reference

#include <OpenMS/DATASTRUCTURES/StringUtils.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/METADATA/PeptideIdentification.h>
#include <OpenMS/METADATA/PeptideIdentificationList.h>
#include <string>
#include <unordered_map>

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Namespaces
namespace	OpenMS
	Main OpenMS namespace.
namespace	OpenMS::CometNativeIDRemapper
	Rewrite spectrum native IDs to a monotonic "index=N" form and translate PSM references back.

Functions
Size	rewriteToIndex (MSExperiment &exp)
	Rewrite every spectrum's native ID to "index=N" (monotonic, 0-based).
void	translateReferencesBack (const MSExperiment &exp, PeptideIdentificationList &pids)
	Translate PSM spectrum references from the rewritten "index=N" form back to the original IDs.

Variables
const std::string	ORIGINAL_NATIVE_ID = "original_native_id"
	MetaValue key under which the original native ID is stashed by rewriteToIndex().