DigestionEnzymeRNA.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Hendrik Weisser $
// $Authors: Hendrik Weisser $
// --------------------------------------------------------------------------
//
 
#pragma once
 
#include <OpenMS/CHEMISTRY/DigestionEnzyme.h>
 
namespace OpenMS
{
  class OPENMS_DLLAPI DigestionEnzymeRNA: public DigestionEnzyme
  {
  public:
    void setCutsAfterRegEx(const std::string& value);
 
    std::string getCutsAfterRegEx() const;
 
    void setCutsBeforeRegEx(const std::string& value);
 
    std::string getCutsBeforeRegEx() const;
 
    void setThreePrimeGain(const std::string& value);
 
    std::string getThreePrimeGain() const;
 
    void setFivePrimeGain(const std::string& value);
 
    std::string getFivePrimeGain() const;
 
    bool setValueFromFile(const std::string& key, const std::string& value) override;
 
  protected:
    std::string three_prime_gain_;
    std::string five_prime_gain_;
    std::string cuts_after_regex_;
    std::string cuts_before_regex_;
  };
 
  typedef DigestionEnzymeRNA RNase;
}