MS1LabelState.h File Reference

#include <OpenMS/CHEMISTRY/AASequence.h>
#include <OpenMS/CONCEPT/Types.h>
#include <OpenMS/METADATA/PeptideHit.h>
#include <string>
#include <vector>

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Classes
struct	Keys
	The registry indices of the three keys, resolved once for a loop over many hits. More...

Namespaces
namespace	OpenMS
	Main OpenMS namespace.
namespace	OpenMS::MS1LabelState
	The label state of an identification in MS1-labeled (SILAC, Dimethyl, ...) data.

Functions
const std::vector< std::string > &	keys ()
	The three keys, in the order they are reported.
bool	hasMatchedSequence (const PeptideHit &hit)
bool	hasMatchedSequence (const PeptideHit &hit, const Keys &keys)
	Index-based variant of hasMatchedSequence() for loops over many hits.
AASequence	matchedSequence (const PeptideHit &hit)
	The peptidoform hit was matched to the spectrum with.
AASequence	matchedSequence (const PeptideHit &hit, const Keys &keys)
	Index-based variant of matchedSequence() for loops over many hits.
PeptideHit	withMatchedSequence (const PeptideHit &hit)
	A copy of hit whose sequence is matchedSequence(); an unchanged copy when no label state is recorded.

Variables
const std::string	LABELED_SEQUENCE = "MS1Label:labeled_sequence"
	Meta value key: the peptidoform the spectrum was matched with (see the namespace documentation)
const std::string	REMOVED_LABELS = "MS1Label:removed_labels"
	Meta value key: the labels removed from the matched peptidoform, or "none".
const std::string	CHANNEL = "MS1Label:channel"
	Meta value key: the 1-based channel the spectrum belongs to (0 = unknown)