OpenSwathLibraryIDNormalizer.h File Reference

#include <OpenMS/CONCEPT/Types.h>
#include <OpenMS/OPENSWATHALGO/DATAACCESS/TransitionExperiment.h>
#include <optional>
#include <string>
#include <unordered_map>

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Classes
class	OpenSwathLibraryIDNormalizer
	Establish and validate canonical precursor/transition identifiers for OpenSWATH libraries. More...
struct	OpenSwathLibraryIDNormalizer::SourceIDMapping
	Source-to-canonical precursor provenance captured during library loading. More...

Namespaces
namespace	OpenMS
	Main OpenMS namespace.

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Class Documentation

OpenMS::OpenSwathLibraryIDNormalizer::SourceIDMapping

struct OpenMS::OpenSwathLibraryIDNormalizer::SourceIDMapping

Source-to-canonical precursor provenance captured during library loading.

The operational LightTargetedExperiment contains only canonical numeric IDs. This mapping retains the original precursor identifiers long enough for callers that still need source-ID semantics (for example configurable target/decoy pairing) without reusing source identifiers as operational foreign keys.

Class Members
unordered_map< string, string >	precursor_canonical_to_source	Canonical operational precursor ID -> original/source precursor ID.
unordered_map< string, string >	precursor_source_to_canonical	Original/source precursor ID -> canonical operational precursor ID.
unordered_map< string, string >	transition_canonical_to_source	Canonical operational transition ID -> original/source transition ID. Source transition IDs are not required to be unique, so only the canonical-to-source direction is retained.