OpenMS::ims Namespace Reference

Classes
class	IMSAlphabet
	Holds an indexed list of bio-chemical elements used by mass-decomposition algorithms. More...
class	IMSAlphabetParser
	An abstract templatized parser to load the data that is used to initialize Alphabet objects. More...
class	IMSAlphabetTextParser
	Implements abstract AlphabetParser to read data from the plain text format. More...
class	IMSElement
	Represents a chemical atom with name and isotope distribution. More...
class	IMSIsotopeDistribution
	Represents a distribution of isotopes restricted to the first K elements. More...
class	IntegerMassDecomposer
	Implements MassDecomposer interface using algorithm and data structures described in paper "Efficient Mass Decomposition" S. Böcker, Z. Lipták, ACM SAC-BIO, 2004 doi:10.1145/1066677.1066715. More...
class	MassDecomposer
	An interface to handle decomposing of integer values/masses over a set of integer weights (alphabet). More...
class	RealMassDecomposer
	Decomposes a real-valued mass over a real-valued alphabet of Weights, within a configurable absolute mass error. More...
class	Weights
	Pairs an alphabet of double-valued masses with the scaled integer weights derived from them. More...

Functions
std::ostream &	operator<< (std::ostream &os, const IMSAlphabet &alphabet)
std::ostream &	operator<< (std::ostream &os, const IMSElement &element)
std::ostream &	operator<< (std::ostream &os, const IMSIsotopeDistribution &distribution)
std::ostream &	operator<< (std::ostream &os, const Weights &weights)
	Print every integer weight of weights to os, one per line.

Function Documentation

operator<<() [1/4]

std::ostream & operator<<	(	std::ostream &	os,
		const IMSAlphabet &	alphabet
	)

Prints alphabet to the stream os.

Parameters

[out]	os	Output stream to which alphabet is written
[in]	alphabet	Alphabet to be written.

operator<<() [2/4]

std::ostream & operator<<	(	std::ostream &	os,
		const IMSElement &	element
	)

Prints element to the stream os.

Parameters

[in,out]	os	Output stream to which element is printed out.
[in]	element	Element to be printed out.

operator<<() [3/4]

std::ostream & operator<<	(	std::ostream &	os,
		const IMSIsotopeDistribution &	distribution
	)

Prints isotope distribution to the stream os.

Parameters

[out]	os	Output stream to which distribution is printed out.
[in]	distribution	Distribution to be printed out.

operator<<() [4/4]

std::ostream & operator<<	(	std::ostream &	os,
		const Weights &	weights
	)

Print every integer weight of weights to os, one per line.

Parameters

[out]	os	Output stream.
[in]	weights	Weights container whose integer weights are written.

Returns

Reference to os for chaining.