Slimmer structure as storing all scored candidates in PeptideHit objects takes too much space. More...

#include <OpenMS/ANALYSIS/ID/ProSEAlgorithm.h>

Collaboration diagram for ProSEAlgorithm::AnnotatedHit_:

Static Public Member Functions
static bool	hasBetterScore (const AnnotatedHit_ &a, const AnnotatedHit_ &b)

Public Attributes
AASequence	sequence

double	score = 0
	main score

double	delta_mass = 0.0
	mass difference for open search (Da)

float	prefix_fraction = 0
	fraction of annotated prefix ions (a/b/c)

float	suffix_fraction = 0
	fraction of annotated suffix ions (x/y/z)

float	mean_error = 0.0f
	mean absolute fragment mass error

int	isotope_error = 0
	isotope offset used for this PSM

uint16_t	applied_charge = 0
	precursor charge used for this PSM

uint16_t	matched_prefix_ions = 0
	number of matched prefix ions (a/b/c)

uint16_t	matched_suffix_ions = 0
	number of matched suffix ions (x/y/z)

Detailed Description

Slimmer structure as storing all scored candidates in PeptideHit objects takes too much space.

Member Function Documentation

◆ hasBetterScore()

static bool hasBetterScore	(	const AnnotatedHit_ &	a,
		const AnnotatedHit_ &	b
	)

inlinestatic

References ProSEAlgorithm::AnnotatedHit_::score, and ProSEAlgorithm::AnnotatedHit_::sequence.

Member Data Documentation

◆ applied_charge

uint16_t applied_charge = 0

precursor charge used for this PSM

◆ delta_mass

double delta_mass = 0.0

mass difference for open search (Da)

◆ isotope_error

int isotope_error = 0

isotope offset used for this PSM

◆ matched_prefix_ions

uint16_t matched_prefix_ions = 0

number of matched prefix ions (a/b/c)

◆ matched_suffix_ions

uint16_t matched_suffix_ions = 0

number of matched suffix ions (x/y/z)

◆ mean_error

float mean_error = 0.0f

mean absolute fragment mass error

◆ prefix_fraction

float prefix_fraction = 0

fraction of annotated prefix ions (a/b/c)

◆ score

double score = 0

main score

Referenced by ProSEAlgorithm::AnnotatedHit_::hasBetterScore().

◆ sequence

AASequence sequence