Reader for extracted ion peak-map Parquet files (.xipm). More...

#include <OpenMS/FORMAT/XIPMParquetFile.h>

Collaboration diagram for XIPMParquetFile:

Classes
struct	XIPMPeakMap

struct	XIPMRunInfo

Public Member Functions
	XIPMParquetFile (const std::string &filename)

	XIPMParquetFile (const std::vector< std::string > &filenames)

	XIPMParquetFile (const XIPMParquetFile &rhs)=default

XIPMParquetFile &	operator= (const XIPMParquetFile &rhs)=default

const std::string &	getFilename () const

const std::vector< std::string > &	getFilenames () const

void	load (std::vector< XIPMPeakMap > &output) const

void	getPeakMaps (std::vector< XIPMPeakMap > &output, Int64 precursor_id=-1, Int64 transition_id=-1, const std::string &modified_sequence="", Int64 precursor_charge=-1, Int64 product_charge=-1, Int64 ms_level=-1, Int64 run_id=-1, const std::string &peakmap_type="") const

void	getRuns (std::vector< XIPMRunInfo > &output) const

void	getColumns (std::vector< std::string > &output) const

Private Attributes
std::string	filename_

std::vector< std::string >	filenames_

Detailed Description

Reader for extracted ion peak-map Parquet files (.xipm).

Class Documentation

◆ OpenMS::XIPMParquetFile::XIPMPeakMap

struct OpenMS::XIPMParquetFile::XIPMPeakMap

Collaboration diagram for XIPMParquetFile::XIPMPeakMap:

[legend]

Class Members
string	annotation
Int64	detecting_transition {0}
bool	has_detecting_transition {false}
bool	has_precursor_charge {false}
bool	has_precursor_decoy {false}
bool	has_precursor_id {false}
bool	has_product_charge {false}
bool	has_product_decoy {false}
bool	has_rt_end {false}
bool	has_rt_start {false}
bool	has_target_ion_mobility {false}
bool	has_target_rt {false}
bool	has_transition_id {false}
bool	has_transition_ordinal {false}
vector< double >	intensity
vector< double >	ion_mobility
string	modified_sequence
Int64	ms_level {0}
vector< double >	mz
string	peakmap_type
Int64	precursor_charge {0}
Int64	precursor_decoy {0}
Int64	precursor_id {0}
Int64	product_charge {0}
Int64	product_decoy {0}
vector< double >	rt
double	rt_end {0.0}
double	rt_start {0.0}
Int64	run_id {0}
string	source_file
double	target_ion_mobility {0.0}
double	target_mz {0.0}
double	target_rt {0.0}
Int64	transition_id {0}
Int64	transition_ordinal {0}
string	transition_type

◆ OpenMS::XIPMParquetFile::XIPMRunInfo

struct OpenMS::XIPMParquetFile::XIPMRunInfo

Collaboration diagram for XIPMParquetFile::XIPMRunInfo:

[legend]

Class Members
Int64	run_id {0}
string	source_file

Constructor & Destructor Documentation

◆ XIPMParquetFile() [1/3]

XIPMParquetFile ( const std::string & filename )

explicit

◆ XIPMParquetFile() [2/3]

XIPMParquetFile ( const std::vector< std::string > & filenames )

explicit

◆ XIPMParquetFile() [3/3]

XIPMParquetFile ( const XIPMParquetFile & rhs )

default

Member Function Documentation

◆ getColumns()

void getColumns ( std::vector< std::string > & output ) const

◆ getFilename()

const std::string & getFilename ( ) const

◆ getFilenames()

const std::vector< std::string > & getFilenames ( ) const

◆ getPeakMaps()

void getPeakMaps	(	std::vector< XIPMPeakMap > &	output,
		Int64	precursor_id = `-1`,
		Int64	transition_id = `-1`,
		const std::string &	modified_sequence = `""`,
		Int64	precursor_charge = `-1`,
		Int64	product_charge = `-1`,
		Int64	ms_level = `-1`,
		Int64	run_id = `-1`,
		const std::string &	peakmap_type = `""`
	)		const

◆ getRuns()

void getRuns ( std::vector< XIPMRunInfo > & output ) const

◆ load()

void load ( std::vector< XIPMPeakMap > & output ) const

◆ operator=()

XIPMParquetFile & operator= ( const XIPMParquetFile & rhs )