OpenMS
GoodDiffFilter Class Reference

GoodDiffFilter counts the number ob peak pairs whose m/z difference can be explained by a amino acid loss. More...

#include <OpenMS/FILTERING/TRANSFORMERS/GoodDiffFilter.h>

Inheritance diagram for GoodDiffFilter:
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Collaboration diagram for GoodDiffFilter:
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Public Member Functions

 GoodDiffFilter ()
 default constructor More...
 
 GoodDiffFilter (const GoodDiffFilter &source)
 copy constructor More...
 
 ~GoodDiffFilter () override
 destructor More...
 
GoodDiffFilteroperator= (const GoodDiffFilter &source)
 assignment operator More...
 
template<typename SpectrumType >
double apply (SpectrumType &spectrum)
 
- Public Member Functions inherited from FilterFunctor
 FilterFunctor ()
 default constructor More...
 
 FilterFunctor (const FilterFunctor &source)
 copy constructor More...
 
 ~FilterFunctor () override
 destructor More...
 
FilterFunctoroperator= (const FilterFunctor &source)
 assignment operator More...
 
template<typename SpectrumType >
double apply (SpectrumType &)
 function call operator More...
 
- Public Member Functions inherited from DefaultParamHandler
 DefaultParamHandler (const String &name)
 Constructor with name that is displayed in error messages. More...
 
 DefaultParamHandler (const DefaultParamHandler &rhs)
 Copy constructor. More...
 
virtual ~DefaultParamHandler ()
 Destructor. More...
 
DefaultParamHandleroperator= (const DefaultParamHandler &rhs)
 Assignment operator. More...
 
virtual bool operator== (const DefaultParamHandler &rhs) const
 Equality operator. More...
 
void setParameters (const Param &param)
 Sets the parameters. More...
 
const ParamgetParameters () const
 Non-mutable access to the parameters. More...
 
const ParamgetDefaults () const
 Non-mutable access to the default parameters. More...
 
const StringgetName () const
 Non-mutable access to the name. More...
 
void setName (const String &name)
 Mutable access to the name. More...
 
const std::vector< String > & getSubsections () const
 Non-mutable access to the registered subsections. More...
 

Static Public Member Functions

static FilterFunctorcreate ()
 
static const String getProductName ()
 
- Static Public Member Functions inherited from FilterFunctor
static void registerChildren ()
 
- Static Public Member Functions inherited from DefaultParamHandler
static void writeParametersToMetaValues (const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")
 Writes all parameters to meta values. More...
 

Private Attributes

std::map< double, char > aamass_
 list of unique amino acid masses More...
 

Additional Inherited Members

- Protected Member Functions inherited from DefaultParamHandler
virtual void updateMembers_ ()
 This method is used to update extra member variables at the end of the setParameters() method. More...
 
void defaultsToParam_ ()
 Updates the parameters after the defaults have been set in the constructor. More...
 
- Protected Attributes inherited from DefaultParamHandler
Param param_
 Container for current parameters. More...
 
Param defaults_
 Container for default parameters. This member should be filled in the constructor of derived classes! More...
 
std::vector< Stringsubsections_
 Container for registered subsections. This member should be filled in the constructor of derived classes! More...
 
String error_name_
 Name that is displayed in error messages during the parameter checking. More...
 
bool check_defaults_
 If this member is set to false no checking if parameters in done;. More...
 
bool warn_empty_defaults_
 If this member is set to false no warning is emitted when defaults are empty;. More...
 

Detailed Description

GoodDiffFilter counts the number ob peak pairs whose m/z difference can be explained by a amino acid loss.

Parameters of this class are:

NameTypeDefaultRestrictionsDescription
tolerance float0.37  Tolerance value as defined by Bern et al.

Note:
  • If a section name is documented, the documentation is displayed as tooltip.
  • Advanced parameter names are italic.

Constructor & Destructor Documentation

◆ GoodDiffFilter() [1/2]

default constructor

◆ GoodDiffFilter() [2/2]

GoodDiffFilter ( const GoodDiffFilter source)

copy constructor

◆ ~GoodDiffFilter()

~GoodDiffFilter ( )
override

destructor

Member Function Documentation

◆ apply()

double apply ( SpectrumType spectrum)
inline

◆ create()

static FilterFunctor* create ( )
inlinestatic

◆ getProductName()

static const String getProductName ( )
inlinestatic

◆ operator=()

GoodDiffFilter& operator= ( const GoodDiffFilter source)

assignment operator

Member Data Documentation

◆ aamass_

std::map<double, char> aamass_
private

list of unique amino acid masses