FLASHDeconvFeatureFile.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Kyowon Jeong $
// $Authors: Kyowon Jeong $
// --------------------------------------------------------------------------
 
 
#pragma once
 
#include <OpenMS/ANALYSIS/TOPDOWN/DeconvolvedSpectrum.h>
#include <OpenMS/ANALYSIS/TOPDOWN/FLASHHelperClasses.h>
#include <OpenMS/ANALYSIS/TOPDOWN/PeakGroup.h>
#include <OpenMS/config.h>
#include <iomanip>
#include <iostream>
 
 
namespace OpenMS
{
  class OPENMS_DLLAPI FLASHDeconvFeatureFile
  {
  public:
    static void writeHeader(std::ostream& os, bool report_decoy = false);
 
    static void writeTopFDFeatureHeader(std::ostream& os, uint ms_level);
 
    static void writeFeatures(const std::vector<FLASHHelperClasses::MassFeature>& mass_features, const String& file_name, std::ostream& os, bool report_decoy = false);
 
    static void writeTopFDFeatures(std::vector<DeconvolvedSpectrum>& deconvolved_spectra, const std::vector<FLASHHelperClasses::MassFeature>& mass_features,
                                   const std::map<int, double>& scan_rt_map, const String& file_name, std::ostream& os, uint ms_level);
  };
} // namespace OpenMS