| AAIndex.h | |
| AASequence.h | |
| AbsoluteQuantitation.h | |
| AbsoluteQuantitationMethod.h | |
| AbsoluteQuantitationMethodFile.h | |
| AbsoluteQuantitationStandards.h | |
| AbsoluteQuantitationStandardsFile.h | |
| AccurateMassSearch.cpp | |
| AccurateMassSearchEngine.h | |
| Acquisition.h | |
| AcquisitionInfo.h | |
| AcquisitionInfoVisualizer.h | |
| AcquisitionVisualizer.h | |
| AcqusHandler.h | |
| Adduct.h | |
| AdductInfo.h | |
| AhoCorasickAmbiguous.h | |
| Annotation1DCaret.h | |
| Annotation1DDistanceItem.h | |
| Annotation1DItem.h | |
| Annotation1DPeakItem.h | |
| Annotation1DTextItem.h | |
| Annotation1DVerticalLineItem.h | |
| Annotations1DContainer.h | |
| AppliedProcessingStep.h | |
| AreaIterator.h | |
| AScore.h | |
| AssayGeneratorMetabo.cpp | |
| AssayGeneratorMetaboSirius.cpp | |
| AverageLinkage.h | |
| AxisPainter.h | |
| AxisTickCalculator.h | |
| AxisWidget.h | |
| Base64.h | |
| BaseFeature.h | |
| BaseGroupFinder.h | |
| BaselineFilter.cpp | |
| BaseModel.h | |
| BaseModel_impl.h | |
| BaseSuperimposer.h | |
| BaseVisualizer.h | |
| BaseVisualizerGUI.h | |
| BasicProteinInferenceAlgorithm.h | |
| BasicStatistics.h | |
| BayesianProteinInferenceAlgorithm.h | |
| BiGaussFitter1D.h | |
| BiGaussModel.h | |
| BilinearInterpolation.h | |
| BinaryTreeNode.h | |
| BinnedSharedPeakCount.h | |
| BinnedSpectralContrastAngle.h | |
| BinnedSpectrum.h | |
| BinnedSpectrumCompareFunctor.h | |
| BinnedSumAgreeingIntensities.h | |
| BSpline2d.h | |
| BuildInfo.h | |
| Bzip2Ifstream.h | |
| Bzip2InputStream.h | |
| CachedMzML.h | |
| CachedMzMLHandler.h | |
| CalibrationData.h | |
| Changelog.doxygen | |
| ChargePair.h | |
| ChromatogramExtractor.h | |
| ChromatogramExtractorAlgorithm.h | |
| ChromatogramPeak.h | |
| ChromatogramSettings.h | |
| ChromatogramTools.h | |
| ChromeleonFile.h | |
| ClassTest.h | |
| ClusterAnalyzer.h | |
| ClusterFunctor.h | |
| ClusterHierarchical.h | |
| ClusteringGrid.h | |
| ClusterMassTraces.cpp | |
| ClusterMassTracesByPrecursor.cpp | |
| CoarseIsotopePatternGenerator.h | |
| Colorizer.h | |
| ColorSelector.h | |
| CometAdapter.cpp | |
| commit_messages.doxygen | |
| common-cmake-parameters.doxygen | |
| CommonDefs.h | |
| CommonEnums.h | |
| CompleteLinkage.h | |
| Compomer.h | |
| CompressedInputSource.h | |
| ConfidenceScoring.h | |
| ConsensusFeature.h | |
| ConsensusID.cpp | |
| ConsensusIDAlgorithm.h | |
| ConsensusIDAlgorithmAverage.h | |
| ConsensusIDAlgorithmBest.h | |
| ConsensusIDAlgorithmIdentity.h | |
| ConsensusIDAlgorithmPEPIons.h | |
| ConsensusIDAlgorithmPEPMatrix.h | |
| ConsensusIDAlgorithmRanks.h | |
| ConsensusIDAlgorithmSimilarity.h | |
| ConsensusIDAlgorithmWorst.h | |
| ConsensusMap.h | |
| ConsensusMapMergerAlgorithm.h | |
| ConsensusMapNormalizer.cpp | |
| ConsensusMapNormalizerAlgorithmMedian.h | |
| ConsensusMapNormalizerAlgorithmQuantile.h | |
| ConsensusMapNormalizerAlgorithmThreshold.h | |
| ConsensusXMLFile.h | |
| ConsensusXMLHandler.h | |
| ConsoleUtils.h | |
| Constants.h | |
| ConstRefVector.h | |
| ContactPerson.h | |
| ContactPersonVisualizer.h | |
| Contaminants.h | |
| ControlledVocabulary.h | |
| ConversionHelper.h | |
| ConvexHull2D.h | |
| CrossLinksDB.h | |
| CsvFile.h | |
| CubicSpline2d.h | |
| CVInspector.cpp | |
| CVMappingFile.h | |
| CVMappingRule.h | |
| CVMappings.h | |
| CVMappingTerm.h | |
| CVReference.h | |
| CVTerm.h | |
| CVTermList.h | |
| CVTermListInterface.h | |
| DataAccessHelper.h | |
| DataArrays.h | |
| DatabaseFilter.cpp | |
| DatabaseSuitability.cpp | |
| DataFilterDialog.h | |
| DataFilters.h | |
| DataFrameWriter.h | |
| DataProcessing.h | |
| DataProcessingVisualizer.h | |
| DataSelectionTabs.h | |
| openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h | |
| openms/include/OpenMS/INTERFACES/DataStructures.h | |
| DataValue.h | |
| Date.h | |
| DateTime.h | |
| DBoundingBox.h | |
| DBSearchParam.h | |
| DBSuitability.h | |
| Decharger.cpp | |
| DeconvolvedSpectrum.h | |
| DecoyDatabase.cpp | |
| DecoyGenerator.h | |
| DefaultParamHandler.h | |
| Deisotoper.h | |
| DeMeanderize.cpp | |
| developer_coding_conventions.doxygen | |
| developer_cpp_guide.doxygen | |
| developer_faq.doxygen | |
| developer_how_to_write_tests.doxygen | |
| developer_tutorial.doxygen | |
| DIAHelper.h | |
| DIAPrescoring.h | |
| DIAScoring.h | |
| DIATreeTab.h | |
| DigestionEnzyme.h | |
| DigestionEnzymeDB.h | |
| DigestionEnzymeProtein.h | |
| DigestionEnzymeRNA.h | |
| Digestor.cpp | |
| DigestorMotif.cpp | |
| DimMapper.h | |
| DIntervalBase.h | |
| DistanceMatrix.h | |
| DocumentIdentifier.h | |
| DocumentIdentifierVisualizer.h | |
| DPeak.h | |
| DPosition.h | |
| DRange.h | |
| DTA2DFile.h | |
| DTAExtractor.cpp | |
| DTAFile.h | |
| EDTAFile.h | |
| EGHTraceFitter.h | |
| EICExtractor.cpp | |
| Element.h | |
| ElementDB.h | |
| ElutionModelFitter.h | |
| ElutionPeakDetection.h | |
| EmgFitter1D.h | |
| EmgGradientDescent.h | |
| EmgModel.h | |
| EmgScoring.h | |
| EmpiricalFormula.h | |
| EnhancedTabBar.h | |
| EnhancedTabBarWidgetInterface.h | |
| EnhancedWorkspace.h | |
| EnumHelpers.h | |
| EnzymaticDigestion.h | |
| Epifany.cpp | |
| EuclideanSimilarity.h | |
| Exception.h | |
| ExecutePipeline.cpp | |
| ExperimentalDesign.h | |
| ExperimentalDesignFile.h | |
| ExperimentalSettings.h | |
| ExperimentalSettingsVisualizer.h | |
| ExposedVector.h | |
| ExtendedIsotopeFitter1D.h | |
| ExtendedIsotopeModel.h | |
| ExternalCalibration.cpp | |
| ExternalCode.doxygen | |
| ExternalProcess.h | |
| ExternalProcessMBox.h | |
| FAIMSHelper.h | |
| FalseDiscoveryRate.cpp | |
| FalseDiscoveryRate.h | |
| FASTAContainer.h | |
| FASTAFile.h | |
| FastLowessSmoothing.h | |
| Feature.h | |
| FeatureDeconvolution.h | |
| FeatureDistance.h | |
| FeatureEditDialog.h | |
| FeatureFileOptions.h | |
| FeatureFinderAlgorithm.h | |
| FeatureFinderAlgorithmMetaboIdent.h | |
| FeatureFinderAlgorithmPicked.h | |
| FeatureFinderAlgorithmPickedHelperStructs.h | |
| FeatureFinderCentroided.cpp | |
| FeatureFinderDefs.h | |
| FeatureFinderIdentification.cpp | |
| FeatureFinderIdentificationAlgorithm.h | |
| FeatureFinderMetabo.cpp | |
| FeatureFinderMetaboIdent.cpp | |
| FeatureFinderMultiplex.cpp | |
| FeatureFinderMultiplexAlgorithm.h | |
| FeatureFindingMetabo.h | |
| FeatureGroupingAlgorithm.h | |
| FeatureGroupingAlgorithmKD.h | |
| FeatureGroupingAlgorithmLabeled.h | |
| FeatureGroupingAlgorithmQT.h | |
| FeatureGroupingAlgorithmUnlabeled.h | |
| FeatureHandle.h | |
| FeatureLinkerBase.cpp | |
| FeatureLinkerLabeled.cpp | |
| FeatureLinkerUnlabeled.cpp | |
| FeatureLinkerUnlabeledKD.cpp | |
| FeatureLinkerUnlabeledQT.cpp | |
| FeatureMap.h | |
| FeatureMapping.h | |
| FeatureOverlapFilter.h | |
| FeatureSummary.h | |
| FeatureXMLFile.h | |
| FeatureXMLHandler.h | |
| FIAMSDataProcessor.h | |
| FIAMSScheduler.h | |
| FidHandler.h | |
| File.h | |
| FileConverter.cpp | |
| FileFilter.cpp | |
| FileHandler.h | |
| FileInfo.cpp | |
| FileMerger.cpp | |
| FileTypes.h | |
| FileWatcher.h | |
| FilterableList.h | |
| FilterList.h | |
| FineIsotopePatternGenerator.h | |
| Fitter1D.h | |
| FlagSet.h | |
| FLASHDeconv.cpp | |
| FLASHDeconvAlgorithm.h | |
| FLASHDeconvFeatureFile.h | |
| FLASHDeconvHelperStructs.h | |
| FLASHDeconvSpectrumFile.h | |
| FLASHDeconvTabWidget.h | |
| FLASHDeconvWizard.cpp | |
| FLASHDeconvWizardBase.cpp | |
| FLASHDeconvWizardBase.h | |
| FragmentMassError.h | |
| FuzzyDiff.cpp | |
| FuzzyStringComparator.h | |
| FWHM.h | |
| GammaDistributionFitter.h | |
| GaussFilter.h | |
| GaussFilterAlgorithm.h | |
| GaussFitter.h | |
| GaussFitter1D.h | |
| GaussModel.h | |
| GaussTraceFitter.h | |
| GenericWrapper.cpp | |
| GlobalExceptionHandler.h | |
| GNPSExport.cpp | |
| GNPSMetaValueFile.h | |
| GNPSMGFFile.h | |
| GNPSQuantificationFile.h | |
| Gradient.h | |
| GradientVisualizer.h | |
| GridBasedCluster.h | |
| GridBasedClustering.h | |
| GridFeature.h | |
| GridSearch.h | |
| GUIHelpers.h | |
| GUIProgressLoggerImpl.h | |
| GumbelDistributionFitter.h | |
| GumbelMaxLikelihoodFitter.h | |
| GzipIfstream.h | |
| GzipInputStream.h | |
| HashGrid.h | |
| HDF5Connector.h | |
| Helpers.h | |
| HighResPrecursorMassCorrector.cpp | |
| Histogram.h | |
| HistogramDialog.h | |
| HistogramWidget.h | |
| HPLC.h | |
| HPLCVisualizer.h | |
| HyperScore.h | |
| IBSpectraFile.h | |
| IDBoostGraph.h | |
| IDConflictResolver.cpp | |
| IDConflictResolverAlgorithm.h | |
| IDDecoyProbability.cpp | |
| IDDecoyProbability.h | |
| IdentificationData.h | |
| IdentificationDataConverter.h | |
| IdentificationSummary.h | |
| IdentifiedCompound.h | |
| IdentifiedMolecule.h | |
| IdentifiedSequence.h | |
| IDExtractor.cpp | |
| IDFileConverter.cpp | |
| IDFilter.cpp | |
| IDFilter.h | |
| IDMapper.cpp | |
| IDMapper.h | |
| IDMassAccuracy.cpp | |
| IDMerger.cpp | |
| IDMergerAlgorithm.h | |
| IDPosteriorErrorProbability.cpp | |
| IDRipper.cpp | |
| IDRipper.h | |
| IDRTCalibration.cpp | |
| IDScoreGetterSetter.h | |
| IDScoreSwitcher.cpp | |
| IDScoreSwitcherAlgorithm.h | |
| IDSplitter.cpp | |
| IdXMLFile.h | |
| ILPDCWrapper.h | |
| ImageCreator.cpp | |
| IMDataConverter.h | |
| IMSAlphabet.h | |
| IMSAlphabetParser.h | |
| IMSAlphabetTextParser.h | |
| IMSDataConsumer.h | |
| IMSElement.h | |
| IMSIsotopeDistribution.h | |
| IMTypes.h | |
| IncludeExcludeTarget.h | |
| IndentedStream.h | |
| IndexedMzMLDecoder.h | |
| IndexedMzMLFileLoader.h | |
| IndexedMzMLHandler.h | |
| INIFileEditor.cpp | |
| INIFileEditorWindow.cpp | |
| INIFileEditorWindow.h | |
| Init.h | |
| INIUpdater.cpp | |
| INIUpdater.h | |
| include/OpenMS/METADATA/ID/InputFile.h | |
| gui/include/OpenMS/VISUAL/InputFile.h | |
| InputFileList.h | |
| InspectInfile.h | |
| InspectOutfile.h | |
| install-linux.doxygen | |
| install-macs.doxygen | |
| install-win.doxygen | |
| Instrument.h | |
| InstrumentSettings.h | |
| InstrumentSettingsVisualizer.h | |
| InstrumentVisualizer.h | |
| IntegerMassDecomposer.h | |
| InternalCalibration.cpp | |
| InternalCalibration.h | |
| InterpolationModel.h | |
| IonDetector.h | |
| IonDetectorVisualizer.h | |
| IonIdentityMolecularNetworking.h | |
| IonMobilityBinning.cpp | |
| IonMobilityScoring.h | |
| IonSource.h | |
| IonSourceVisualizer.h | |
| IPeptideIds.h | |
| IsobaricAnalyzer.cpp | |
| IsobaricChannelExtractor.h | |
| IsobaricIsotopeCorrector.h | |
| IsobaricNormalizer.h | |
| IsobaricQuantifier.h | |
| IsobaricQuantifierStatistics.h | |
| IsobaricQuantitationMethod.h | |
| IsoSpecWrapper.h | |
| IsotopeCluster.h | |
| IsotopeDistribution.h | |
| IsotopeFitter1D.h | |
| IsotopeLabelingMDVs.h | |
| IsotopeModel.h | |
| IsotopePatternGenerator.h | |
| openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h | |
| openms/include/OpenMS/INTERFACES/ISpectrumAccess.h | |
| ITransition.h | |
| ItraqConstants.h | |
| ItraqEightPlexQuantitationMethod.h | |
| ItraqFourPlexQuantitationMethod.h | |
| JavaInfo.h | |
| JSONExporter.cpp | |
| KDTree.h | |
| KDTreeFeatureMaps.h | |
| KDTreeFeatureNode.h | |
| KroenikFile.h | |
| LabeledPairFinder.h | |
| LayerData1DBase.h | |
| LayerData1DChrom.h | |
| LayerData1DIonMobility.h | |
| LayerData1DPeak.h | |
| LayerDataBase.h | |
| LayerDataChrom.h | |
| LayerDataConsensus.h | |
| LayerDataFeature.h | |
| LayerDataIdent.h | |
| LayerDataIonMobility.h | |
| LayerDataPeak.h | |
| LayerListView.h | |
| LayerStatistics.h | |
| LayerStatisticsDialog.h | |
| LayerStoreData.h | |
| LevMarqFitter1D.h | |
| LinearInterpolation.h | |
| LinearRegression.h | |
| LinearRegressionWithoutIntercept.h | |
| LinearResampler.h | |
| LinearResamplerAlign.h | |
| ListEditor.h | |
| ListFilterDialog.h | |
| ListUtils.h | |
| ListUtilsIO.h | |
| LogConfigHandler.h | |
| LogStream.h | |
| LogWindow.h | |
| LowessSmoothing.h | |
| LPWrapper.h | |
| LuciphorAdapter.cpp | |
| openswathalgo/include/OpenMS/OPENSWATHALGO/Macros.h | |
| openms/include/OpenMS/CONCEPT/Macros.h | |
| MacrosTest.h | |
| Main.doxygen | |
| MapAlignerBase.h | |
| MapAlignerIdentification.cpp | |
| MapAlignerPoseClustering.cpp | |
| MapAlignerTreeGuided.cpp | |
| MapAlignmentAlgorithmIdentification.h | |
| MapAlignmentAlgorithmKD.h | |
| MapAlignmentAlgorithmPoseClustering.h | |
| MapAlignmentAlgorithmTreeGuided.h | |
| MapAlignmentEvaluationAlgorithm.h | |
| MapAlignmentEvaluationAlgorithmPrecision.h | |
| MapAlignmentEvaluationAlgorithmRecall.h | |
| MapAlignmentTransformer.h | |
| MapNormalizer.cpp | |
| MapRTTransformer.cpp | |
| MapStatistics.cpp | |
| MapUtilities.h | |
| MaRaClusterAdapter.cpp | |
| MascotAdapter.cpp | |
| MascotAdapterOnline.cpp | |
| MascotGenericFile.h | |
| MascotInfile.h | |
| MascotRemoteQuery.h | |
| MascotXMLFile.h | |
| MascotXMLHandler.h | |
| MassAnalyzer.h | |
| MassAnalyzerVisualizer.h | |
| MassCalculator.cpp | |
| MassDecomposer.h | |
| MassDecomposition.h | |
| MassDecompositionAlgorithm.h | |
| MassExplainer.h | |
| MassFeatureTrace.h | |
| MassTrace.h | |
| MasstraceCorrelator.h | |
| MassTraceDetection.h | |
| MassTraceExtractor.cpp | |
| MatchedIterator.h | |
| MathFunctions.h | |
| Matrix.h | |
| MaxLikeliFitter1D.h | |
| MessagePasserFactory.h | |
| MetaboliteAdductDecharger.cpp | |
| MetaboliteFeatureDeconvolution.h | |
| MetaboliteSpectralMatcher.cpp | |
| MetaboliteSpectralMatching.h | |
| MetaboTargetedAssay.h | |
| MetaboTargetedTargetDecoy.h | |
| MetaData.h | |
| MetaDataBrowser.h | |
| MetaInfo.h | |
| MetaInfoDescription.h | |
| MetaInfoDescriptionVisualizer.h | |
| MetaInfoInterface.h | |
| MetaInfoInterfaceUtils.h | |
| MetaInfoRegistry.h | |
| MetaInfoVisualizer.h | |
| MetaProSIP.cpp | |
| MissedCleavages.h | |
| MobilityPeak1D.h | |
| MobilityPeak2D.h | |
| Mobilogram.h | |
| MockObjects.h | |
| ModelDescription.h | |
| ModificationDefinition.h | |
| ModificationDefinitionsSet.h | |
| ModificationsDB.h | |
| ModifiedNASequenceGenerator.h | |
| ModifiedPeptideGenerator.h | |
| Modules.doxygen | |
| MorpheusScore.h | |
| MorphologicalFilter.h | |
| MQEvidenceExporter.h | |
| MQExporterHelper.h | |
| MQMsmsExporter.h | |
| MRMAssay.h | |
| MRMBatchFeatureSelector.h | |
| MRMDecoy.h | |
| MRMFeature.h | |
| MRMFeatureAccessOpenMS.h | |
| MRMFeatureFilter.h | |
| MRMFeatureFinderScoring.h | |
| MRMFeaturePicker.h | |
| MRMFeaturePickerFile.h | |
| MRMFeatureQC.h | |
| MRMFeatureQCFile.h | |
| MRMFeatureSelector.h | |
| MRMIonSeries.h | |
| MRMMapper.cpp | |
| MRMMapping.h | |
| MRMPairFinder.cpp | |
| MRMRTNormalizer.h | |
| MRMScoring.h | |
| MRMTransitionGroup.h | |
| MRMTransitionGroupPicker.cpp | |
| MRMTransitionGroupPicker.h | |
| MS2File.h | |
| Ms2IdentificationRate.h | |
| Ms2SpectrumStats.h | |
| MSChromatogram.h | |
| MSDataAggregatingConsumer.h | |
| MSDataCachedConsumer.h | |
| MSDataChainingConsumer.h | |
| MSDataSqlConsumer.h | |
| MSDataStoringConsumer.h | |
| MSDataTransformingConsumer.h | |
| MSDataWritingConsumer.h | |
| MSExperiment.h | |
| MSFraggerAdapter.cpp | |
| MSGFPlusAdapter.cpp | |
| MsInspectFile.h | |
| MSNumpress.h | |
| MSNumpressCoder.h | |
| MSPFile.h | |
| MSPGenericFile.h | |
| MSSpectrum.h | |
| MSstatsConverter.cpp | |
| MSstatsFile.h | |
| MultiGradient.h | |
| MultiGradientSelector.h | |
| MultiplexClustering.h | |
| MultiplexDeltaMasses.h | |
| MultiplexDeltaMassesGenerator.h | |
| MultiplexFilteredMSExperiment.h | |
| MultiplexFilteredPeak.h | |
| MultiplexFiltering.h | |
| MultiplexFilteringCentroided.h | |
| MultiplexFilteringProfile.h | |
| MultiplexIsotopicPeakPattern.h | |
| MultiplexResolver.cpp | |
| MultiplexSatelliteCentroided.h | |
| MultiplexSatelliteProfile.h | |
| MzCalibration.h | |
| MzDataFile.h | |
| MzDataHandler.h | |
| MzDataValidator.h | |
| MzIdentMLDOMHandler.h | |
| MzIdentMLFile.h | |
| MzIdentMLHandler.h | |
| MzIdentMLValidator.h | |
| MzMLFile.h | |
| MzMLHandler.h | |
| MzMLHandlerHelper.h | |
| MzMLSpectrumDecoder.h | |
| MzMLSplitter.cpp | |
| MzMLSqliteHandler.h | |
| MzMLSqliteSwathHandler.h | |
| MzMLValidator.h | |
| MzQCFile.h | |
| MzTab.h | |
| MzTabBase.h | |
| MzTabExporter.cpp | |
| MzTabFile.h | |
| MzTabM.h | |
| MzTabMFile.h | |
| MZTrafoModel.h | |
| MzXMLFile.h | |
| MzXMLHandler.h | |
| NASequence.h | |
| NeedlemanWunsch.h | |
| NeighborSeq.h | |
| NetworkGetRequest.h | |
| NLargest.h | |
| NNLS.h | |
| NoiseFilterGaussian.cpp | |
| NoiseFilterSGolay.cpp | |
| NonNegativeLeastSquaresSolver.h | |
| NoopMSDataConsumer.h | |
| Normalizer.h | |
| NovorAdapter.cpp | |
| NucleicAcidSearchEngine.cpp | |
| NucleicAcidSpectrumGenerator.h | |
| Observation.h | |
| ObservationMatch.h | |
| ObservationMatchGroup.h | |
| OMSFile.h | |
| OMSFileLoad.h | |
| OMSFileStore.h | |
| OMSSACSVFile.h | |
| OMSSAXMLFile.h | |
| OnDiscMSExperiment.h | |
| OpenMSDatabasesInfo.cpp | |
| OpenMSInfo.cpp | |
| OpenPepXL.cpp | |
| OpenPepXLAlgorithm.h | |
| OpenPepXLLF.cpp | |
| OpenPepXLLFAlgorithm.h | |
| OpenSwathAnalyzer.cpp | |
| OpenSwathAssayGenerator.cpp | |
| OpenSwathBase.h | |
| OpenSwathChromatogramExtractor.cpp | |
| OpenSwathConfidenceScoring.cpp | |
| OpenSwathDecoyGenerator.cpp | |
| OpenSwathDIAPreScoring.cpp | |
| OpenSwathFeatureXMLToTSV.cpp | |
| OpenSwathFileSplitter.cpp | |
| OpenSwathHelper.h | |
| OpenSwathMzMLFileCacher.cpp | |
| OpenSwathOSWWriter.h | |
| OpenSwathRewriteToFeatureXML.cpp | |
| OpenSwathRTNormalizer.cpp | |
| OpenSwathScores.h | |
| OpenSwathScoring.h | |
| OpenSwathWorkflow.cpp | |
| OpenSwathWorkflow.h | |
| OPXLDataStructs.h | |
| OPXLHelper.h | |
| OPXLSpectrumProcessingAlgorithms.h | |
| OSWData.h | |
| OSWFile.h | |
| OutputDirectory.h | |
| Painter1DBase.h | |
| Painter2DBase.h | |
| PainterBase.h | |
| Param.h | |
| ParamCTDFile.h | |
| ParamCWLFile.h | |
| ParamEditor.h | |
| ParameterInformation.h | |
| ParamJSONFile.h | |
| ParamValue.h | |
| ParamXMLFile.h | |
| ParamXMLHandler.h | |
| ParentGroup.h | |
| ParentMatch.h | |
| ParentSequence.h | |
| Peak1D.h | |
| Peak2D.h | |
| PeakAlignment.h | |
| PeakFileOptions.h | |
| PeakGroup.h | |
| PeakIndex.h | |
| PeakIntegrator.h | |
| PeakPickerChromatogram.h | |
| PeakPickerHiRes.cpp | |
| PeakPickerHiRes.h | |
| PeakPickerIterative.cpp | |
| PeakPickerIterative.h | |
| PeakPickerMobilogram.h | |
| PeakSpectrumCompareFunctor.h | |
| PeakTypeEstimator.h | |
| PeakWidthEstimator.h | |
| PepNovoInfile.h | |
| PepNovoOutfile.h | |
| PeptideAndProteinQuant.h | |
| PeptideEvidence.h | |
| PeptideHit.h | |
| PeptideHitVisualizer.h | |
| PeptideIdentification.h | |
| PeptideIdentificationVisualizer.h | |
| PeptideIndexer.cpp | |
| PeptideIndexing.h | |
| PeptideMass.h | |
| PeptideProteinResolution.h | |
| PepXMLFile.h | |
| PepXMLFileMascot.h | |
| PercolatorAdapter.cpp | |
| PercolatorFeatureSetHelper.h | |
| PercolatorInfile.h | |
| PercolatorOutfile.h | |
| PhosphoScoring.cpp | |
| Plot1DCanvas.h | |
| Plot1DGoToDialog.h | |
| Plot1DPrefDialog.h | |
| Plot1DWidget.h | |
| Plot2DCanvas.h | |
| Plot2DGoToDialog.h | |
| Plot2DPrefDialog.h | |
| Plot2DWidget.h | |
| Plot3DCanvas.h | |
| Plot3DOpenGLCanvas.h | |
| Plot3DPrefDialog.h | |
| Plot3DWidget.h | |
| PlotCanvas.h | |
| PlotWidget.h | |
| PoseClusteringAffineSuperimposer.h | |
| PoseClusteringShiftSuperimposer.h | |
| PosteriorErrorProbabilityModel.h | |
| PrecisionWrapper.h | |
| Precursor.h | |
| PrecursorCorrection.h | |
| PrecursorPurity.h | |
| PrecursorVisualizer.h | |
| ProcessingSoftware.h | |
| ProcessingStep.h | |
| Product.h | |
| ProductVisualizer.h | |
| ProgressLogger.h | |
| ProteaseDB.h | |
| ProteaseDigestion.h | |
| ProteinHit.h | |
| ProteinHitVisualizer.h | |
| ProteinIdentification.h | |
| ProteinIdentificationVisualizer.h | |
| ProteinInference.cpp | |
| ProteinInference.h | |
| ProteinQuantifier.cpp | |
| ProteomicsLFQ.cpp | |
| ProtXMLFile.h | |
| PScore.h | |
| PSMExplainedIonCurrent.h | |
| PSMFeatureExtractor.cpp | |
| PTMXMLFile.h | |
| PTMXMLHandler.h | |
| PyOpenMS.doxygen | |
| PythonInfo.h | |
| PythonModuleRequirement.h | |
| PythonSelector.h | |
| QApplicationTOPP.cpp | |
| QApplicationTOPP.h | |
| QCBase.h | |
| QCCalculator.cpp | |
| QCEmbedder.cpp | |
| QCExporter.cpp | |
| QCExtractor.cpp | |
| QCImporter.cpp | |
| QCMerger.cpp | |
| QcMLFile.h | |
| QCShrinker.cpp | |
| Qscore.h | |
| Qt5Port.h | |
| QTCluster.h | |
| QTClusterFinder.h | |
| QuadraticRegression.h | |
| QualityControl.cpp | |
| Qvalue.h | |
| RAIICleanup.h | |
| RangeManager.h | |
| RangeUtils.h | |
| RankScaler.h | |
| RANSAC.h | |
| RANSACModel.h | |
| RANSACModelLinear.h | |
| RANSACModelQuadratic.h | |
| ReactionMonitoringTransition.h | |
| RealMassDecomposer.h | |
| RecentFilesMenu.h | |
| Resampler.cpp | |
| Residue.h | |
| ResidueDB.h | |
| ResidueModification.h | |
| Ribonucleotide.h | |
| RibonucleotideDB.h | |
| RichPeak2D.h | |
| RNADigestor.cpp | |
| RNAMassCalculator.cpp | |
| RNaseDB.h | |
| RNaseDigestion.h | |
| RNPxlFragmentAnnotationHelper.h | |
| RNPxlMarkerIonExtractor.h | |
| RNPxlXICFilter.cpp | |
| ROCCurve.h | |
| RTAlignment.h | |
| RWrapper.h | |
| SageAdapter.cpp | |
| Sample.h | |
| SampleVisualizer.h | |
| SaveImageDialog.h | |
| SavitzkyGolayFilter.h | |
| ScanWindow.h | |
| ScanWindowVisualizer.h | |
| ScoredProcessingResult.h | |
| ScoreType.h | |
| Scoring.h | |
| SearchEngineBase.h | |
| SeedListGenerator.cpp | |
| SeedListGenerator.h | |
| SemanticValidator.cpp | |
| SemanticValidator.h | |
| SequenceCoverageCalculator.cpp | |
| SequenceVisualizer.h | |
| SequestInfile.h | |
| SequestOutfile.h | |
| SignalToNoiseEstimator.h | |
| SignalToNoiseEstimatorMeanIterative.h | |
| SignalToNoiseEstimatorMedian.h | |
| SignalToNoiseEstimatorMedianRapid.h | |
| SIMDe.h | |
| SimpleOpenMSSpectraAccessFactory.h | |
| SimpleSearchEngine.cpp | |
| SimpleSearchEngineAlgorithm.h | |
| SimpleSVM.h | |
| SimpleTSGXLMS.h | |
| SingleLinkage.h | |
| SiriusExport.cpp | |
| SiriusExportAlgorithm.h | |
| SiriusFragmentAnnotation.h | |
| SiriusMSConverter.h | |
| Software.h | |
| SoftwareVisualizer.h | |
| SourceFile.h | |
| SourceFileVisualizer.h | |
| SpecArrayFile.h | |
| SpecLibCreator.cpp | |
| SpecLibSearcher.cpp | |
| SpectraFilterNLargest.cpp | |
| SpectraFilterNormalizer.cpp | |
| SpectraFilterThresholdMower.cpp | |
| SpectraFilterWindowMower.cpp | |
| SpectraIDViewTab.h | |
| SpectraMerger.cpp | |
| SpectraMerger.h | |
| SpectraSTSearchAdapter.cpp | |
| SpectraSTSimilarityScore.h | |
| SpectraTreeTab.h | |
| SpectrumAccessOpenMS.h | |
| SpectrumAccessOpenMSCached.h | |
| SpectrumAccessOpenMSInMemory.h | |
| SpectrumAccessQuadMZTransforming.h | |
| SpectrumAccessSqMass.h | |
| SpectrumAccessTransforming.h | |
| SpectrumAddition.h | |
| SpectrumAlignment.h | |
| SpectrumAlignmentDialog.h | |
| SpectrumAlignmentScore.h | |
| SpectrumAnnotator.h | |
| SpectrumCheapDPCorr.h | |
| SpectrumCount.h | |
| SpectrumHelper.h | |
| SpectrumHelpers.h | |
| SpectrumLookup.h | |
| SpectrumMetaDataLookup.h | |
| SpectrumPrecursorComparator.h | |
| SpectrumSettings.h | |
| SpectrumSettingsVisualizer.h | |
| SplineBisection.h | |
| SplineInterpolatedPeaks.h | |
| SplinePackage.h | |
| SqliteConnector.h | |
| SqMassFile.h | |
| SqrtScaler.h | |
| StablePairFinder.h | |
| StandardTypes.h | |
| StaticModification.cpp | |
| StatisticFunctions.h | |
| StatsHelpers.h | |
| SteinScottImproveScore.h | |
| StopWatch.h | |
| StreamHandler.h | |
| String.h | |
| StringConversions.h | |
| StringListUtils.h | |
| StringUtils.h | |
| StringUtilsSimple.h | |
| StringView.h | |
| SVOutStream.h | |
| SwathFile.h | |
| SwathFileConsumer.h | |
| SwathLibraryStats.h | |
| SwathMap.h | |
| SwathMapMassCorrection.h | |
| SwathQC.h | |
| SwathTabWidget.h | |
| SwathWindowLoader.h | |
| SwathWizard.cpp | |
| SwathWizardBase.cpp | |
| SwathWizardBase.h | |
| SysInfo.h | |
| TableView.h | |
| Tagger.h | |
| TargetedExperiment.h | |
| TargetedExperimentHelper.h | |
| TargetedFileConverter.cpp | |
| TargetedSpectraExtractor.h | |
| TextExporter.cpp | |
| TextFile.h | |
| TheoreticalSpectrumGenerationDialog.h | |
| TheoreticalSpectrumGenerator.h | |
| TheoreticalSpectrumGeneratorXLMS.h | |
| ThresholdMower.h | |
| TIC.h | |
| TICCalculator.cpp | |
| TMTEighteenPlexQuantitationMethod.h | |
| TMTElevenPlexQuantitationMethod.h | |
| TMTSixPlexQuantitationMethod.h | |
| TMTSixteenPlexQuantitationMethod.h | |
| TMTTenPlexQuantitationMethod.h | |
| ToolDescription.h | |
| ToolDescriptionFile.h | |
| ToolDescriptionHandler.h | |
| ToolHandler.h | |
| ToolsDialog.h | |
| TOPP.doxygen | |
| TOPPAS.cpp | |
| TOPPAS.doxygen | |
| TOPPASBase.cpp | |
| TOPPASBase.h | |
| TOPPASEdge.h | |
| TOPPASInputFileDialog.h | |
| TOPPASInputFileListVertex.h | |
| TOPPASInputFilesDialog.h | |
| TOPPASIOMappingDialog.h | |
| TOPPASMergerVertex.h | |
| TOPPASOutputFileListVertex.h | |
| TOPPASOutputFilesDialog.h | |
| TOPPASOutputFolderVertex.h | |
| TOPPASOutputVertex.h | |
| TOPPASResource.h | |
| TOPPASResources.h | |
| TOPPASScene.h | |
| TOPPASSplitterVertex.h | |
| TOPPASToolConfigDialog.h | |
| TOPPASToolVertex.h | |
| TOPPASTreeView.h | |
| TOPPASVertex.h | |
| TOPPASVertexNameDialog.h | |
| TOPPASWidget.h | |
| TOPPBase.h | |
| TOPPView.cpp | |
| TOPPViewBase.cpp | |
| TOPPViewBase.h | |
| TOPPViewMenu.h | |
| TOPPViewOpenDialog.h | |
| TOPPViewPrefDialog.h | |
| TraceFitter.h | |
| TraMLFile.h | |
| TraMLHandler.h | |
| TraMLValidator.h | |
| TransformationDescription.h | |
| TransformationModel.h | |
| TransformationModelBSpline.h | |
| TransformationModelInterpolated.h | |
| TransformationModelLinear.h | |
| TransformationModelLowess.h | |
| TransformationXMLFile.h | |
| TransitionExperiment.h | |
| TransitionHelper.h | |
| TransitionPQPFile.h | |
| Transitions.h | |
| TransitionTSVFile.h | |
| TreeView.h | |
| TriqlerConverter.cpp | |
| TriqlerFile.h | |
| TVControllerBase.h | |
| TVDIATreeTabController.h | |
| TVIdentificationViewController.h | |
| TVSpectraViewController.h | |
| TVToolDiscovery.h | |
| Types.h | |
| UnimodXMLFile.h | |
| UnimodXMLHandler.h | |
| UniqueIdGenerator.h | |
| UniqueIdIndexer.h | |
| UniqueIdInterface.h | |
| UpdateCheck.h | |
| user_FAQ.doxygen | |
| VersionInfo.h | |
| Weights.h | |
| WindowMower.h | |
| WizardHelper.h | |
| XFDR.cpp | |
| XFDRAlgorithm.h | |
| XMassFile.h | |
| XMLFile.h | |
| XMLHandler.h | |
| XMLValidator.cpp | |
| XMLValidator.h | |
| XQuestResultXMLFile.h | |
| XQuestResultXMLHandler.h | |
| XQuestScores.h | |
| XTandemInfile.h | |
| XTandemXMLFile.h | |
| ZhangSimilarityScore.h | |
| ZlibCompression.h | |
1.9.1 
