TOPPASBase.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Johannes Veit $
// $Authors: Johannes Junker, Chris Bielow $
// --------------------------------------------------------------------------
 
#pragma once
 
// OpenMS_GUI config
#include <OpenMS/VISUAL/OpenMS_GUIConfig.h>
 
//OpenMS
#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/VISUAL/EnhancedWorkspace.h>
#include <OpenMS/VISUAL/TOPPASTreeView.h>
#include <OpenMS/VISUAL/RecentFilesMenu.h>
 
//QT
#include <QtWidgets/QButtonGroup>
#include <QtWidgets/QMainWindow>
#include <QtWidgets/QMdiArea>
#include <QtNetwork/QNetworkReply>
#include <QtWidgets/QSplashScreen>
 
class QToolBar;
class QListWidget;
class QTextEdit;
class QMdiArea;
class QLabel;
class QPushButton;
class QWidget;
class QTreeWidget;
class QTreeWidgetItem;
class QWebView;
class QNetworkAccessManager;
 
 
namespace OpenMS
{
  class EnhancedWorkSpace;
  class EnhancedTabBar;
  class TOPPASWidget;
  class TOPPASScene;
  class LogWindow;
  class TOPPASResources;
 
  class OPENMS_GUI_DLLAPI TOPPASBase :
    public QMainWindow,
    public DefaultParamHandler
  {
    Q_OBJECT
 
public:
 
    TOPPASBase(QWidget* parent = nullptr);
    ~TOPPASBase() override;
 
    void loadPreferences(String filename = "");
    void savePreferences();
    void loadFiles(const std::vector<String>& list, QSplashScreen* splash_screen);
 
public slots:
    void addTOPPASFile(const String& file_name, bool in_new_window = true);
    void openFilesByDialog();
    void openExampleDialog();
    void newPipeline();
    void includePipeline();
    void saveCurrentPipelineAs();
    void savePipeline();
    void exportAsImage();
    void loadPipelineResourceFile();
    void savePipelineResourceFile();
    void openOnlinePipelineRepository();
    void preferencesDialog();
    void updateCurrentPath();
    void updateTabBar(QMdiSubWindow* w);
    void showAboutDialog();
    void showURL();
    void showStatusMessage(const std::string& msg, OpenMS::UInt time);
    void showCursorStatus(double x, double y);
    void closeFile();
    void updateToolBar();
    void runPipeline();
    void abortPipeline();
    void toolStarted();
    void toolFinished();
    void toolCrashed();
    void toolFailed();
    void outputVertexFinished(const String& file);
    void updateTOPPOutputLog(const QString& out);
    void showPipelineFinishedLogMessage();
    void saveToClipboard(TOPPASScene* scene);
    void sendClipboardContent();
    void refreshParameters();
    void openFilesInTOPPView(QStringList all_files);
    void openToppasFile(const QString& filename);
protected slots:
 
    void closeByTab(int id);
    void focusByTab(int id);
 
    void updateMenu();
    void showAsWindow_(TOPPASWidget* sw, const String& caption);
    void insertNewVertex_(double x, double y, QTreeWidgetItem* item = nullptr);
    void insertNewVertexInCenter_(QTreeWidgetItem* item);
 
    void downloadTOPPASfromHomepage_(const QUrl& url);
    void toppasFileDownloaded_(QNetworkReply* r);
    void TOPPASreadyRead();
 
    void descriptionUpdated_();
 
protected:
 
    LogWindow* log_;
    QTextEdit* desc_;
 
    QToolBar* tool_bar_;
 
    RecentFilesMenu recent_files_menu_;  // needs to be declared before 'menu_', because its needed there
 
    EnhancedWorkspace* ws_;
 
    QWebView* webview_;
    QNetworkAccessManager* network_manager_;
    QNetworkReply* network_reply_;
 
    EnhancedTabBar* tab_bar_;
 
    TOPPASTreeView* tools_tree_view_;
    QLineEdit* tools_filter_;
    QPushButton* tools_expand_all_;
    QPushButton* tools_collapse_all_;
    QListWidget* blocks_list_;
 
    QLabel* message_label_;
 
    TOPPASWidget* window_(int id) const;
 
    void filterToolTree_();
 
    String current_path_;
 
    String tmp_path_;
 
    static int node_offset_;
 
    static qreal z_value_;
 
    TOPPASWidget* activeSubWindow_() const;
 
 
    void closeEvent(QCloseEvent* event) override;
    void keyPressEvent(QKeyEvent* e) override;
 
    TOPPASScene* clipboard_scene_;
 
 
public:
 
 
    static TOPPASTreeView* createTOPPToolsTreeWidget(QWidget* parent_widget = nullptr);
 
    static QString savePipelineAs(TOPPASWidget* w, const QString& current_path);
 
    static QString loadPipelineResourceFile(TOPPASWidget* w, const QString& current_path);
 
    static QString savePipelineResourceFile(TOPPASWidget* w, const QString& current_path);
 
    static QString refreshPipelineParameters(TOPPASWidget* tw, QString current_path);
  }; //class
 
} //namespace