IdentifierMSRunMapper.h

Go to the documentation of this file.

// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Timo Sachsenberg $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/DATASTRUCTURES/String.h>
#include <OpenMS/DATASTRUCTURES/ListUtils.h>
#include <OpenMS/config.h>
 
#include <map>
#include <vector>
 
namespace OpenMS
{
  // Forward declarations
  class ProteinIdentification;
  class PeptideIdentification;
 
  class OPENMS_DLLAPI IdentifierMSRunMapper
  {
  public:
    IdentifierMSRunMapper() = default;
 
    explicit IdentifierMSRunMapper(const std::vector<ProteinIdentification>& prot_ids);
 
    void create(const std::vector<ProteinIdentification>& prot_ids);
 
    String getPrimaryMSRunPath(const PeptideIdentification& pepid) const;
 
    bool hasIdentifier(const String& identifier) const;
 
    const String& getIdentifier(const StringList& ms_run_paths) const;
 
    bool empty() const;
 
    Size size() const;
 
    const StringList& getMSRunPaths(const String& identifier) const;
 
    std::vector<String> getIdentifiers() const;
 
    bool hasRunPath(const StringList& ms_run_paths) const;
 
    bool tryGetIdentifier(const StringList& ms_run_paths, String& identifier) const;
 
  private:
    static const StringList empty_stringlist_; 
    std::map<String, StringList> identifier_to_msrunpath_;
    std::map<StringList, String> runpath_to_identifier_;
  };
 
} // namespace OpenMS