QuantmsIO.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Julianus Pfeuffer $
// $Authors: Julianus Pfeuffer $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/METADATA/ProteinIdentification.h>
#include <OpenMS/METADATA/PeptideIdentification.h>
#include <OpenMS/METADATA/PeptideIdentificationList.h>
 
#include <vector>
#include <set>
 
namespace OpenMS
{
  class OPENMS_DLLAPI QuantmsIO :
    public ProgressLogger
  {
  public:
    QuantmsIO() = default;
 
    ~QuantmsIO();
 
    void store(const String& filename,
               const std::vector<ProteinIdentification>& protein_identifications,
               const PeptideIdentificationList& peptide_identifications);
 
    void store(const String& filename,
               const std::vector<ProteinIdentification>& protein_identifications,
               const PeptideIdentificationList& peptide_identifications,
               bool export_all_psms);
 
    void store(const String& filename,
               const std::vector<ProteinIdentification>& protein_identifications,
               const PeptideIdentificationList& peptide_identifications,
               bool export_all_psms,
               const std::set<String>& meta_value_keys);
 
  };
 
} // namespace OpenMS