OpenMS
AASequence Member List

This is the complete list of members for AASequence, including all inherited members.

AASequence()=defaultAASequence
AASequence(const AASequence &)=defaultAASequence
AASequence(AASequence &&)=defaultAASequence
AASequence(const String &s)AASequenceexplicit
AASequence(const char *s)AASequenceexplicit
AASequence(const String &s, bool permissive)AASequenceexplicit
AASequence(const char *s, bool permissive)AASequenceexplicit
begin()AASequenceinline
begin() constAASequenceinline
c_term_mod_AASequenceprotected
empty() constAASequence
end()AASequenceinline
end() constAASequenceinline
fromString(const String &s, bool permissive=true)AASequencestatic
fromString(const char *s, bool permissive=true)AASequencestatic
getAAFrequencies(std::map< String, Size > &frequency_table) constAASequence
getAverageWeight(Residue::ResidueType type=Residue::Full, Int charge=0) constAASequence
getCTerminalModification() constAASequence
getCTerminalModificationName() constAASequence
getFormula(Residue::ResidueType type=Residue::Full, Int charge=0) constAASequence
getMonoWeight(Residue::ResidueType type=Residue::Full, Int charge=0) constAASequence
getMZ(Int charge, Residue::ResidueType type=Residue::Full) constAASequence
getNTerminalModification() constAASequence
getNTerminalModificationName() constAASequence
getPrefix(Size index) constAASequence
getResidue(Size index) constAASequence
getSubsequence(Size index, UInt number) constAASequence
getSuffix(Size index) constAASequence
has(const Residue &residue) constAASequence
hasCTerminalModification() constAASequence
hasNTerminalModification() constAASequence
hasPrefix(const AASequence &peptide) constAASequence
hasSubsequence(const AASequence &peptide) constAASequence
hasSuffix(const AASequence &peptide) constAASequence
isModified() constAASequence
n_term_mod_AASequenceprotected
operator!=(const AASequence &rhs) constAASequence
operator+(const AASequence &peptide) constAASequence
operator+(const Residue *residue) constAASequence
operator+=(const AASequence &)AASequence
operator+=(const Residue *)AASequence
operator<(const AASequence &rhs) constAASequence
operator<<(std::ostream &os, const AASequence &peptide)AASequencefriend
operator=(const AASequence &)=defaultAASequence
operator=(AASequence &&)=defaultAASequence
operator==(const AASequence &rhs) constAASequence
operator>>(std::istream &is, const AASequence &peptide)AASequencefriend
operator[](Size index) constAASequence
parseModRoundBrackets_(const String::ConstIterator str_it, const String &str, AASequence &aas, const ResidueModification::TermSpecificity &specificity)AASequenceprotectedstatic
parseModSquareBrackets_(const String::ConstIterator str_it, const String &str, AASequence &aas, const ResidueModification::TermSpecificity &specificity)AASequenceprotectedstatic
parseString_(const String &peptide, AASequence &aas, bool permissive=true)AASequenceprotectedstatic
peptide_AASequenceprotected
setCTerminalModification(const String &modification)AASequence
setCTerminalModification(const ResidueModification *modification)AASequence
setCTerminalModification(const ResidueModification &mod)AASequence
setCTerminalModificationByDiffMonoMass(double diffMonoMass, bool protein_term)AASequence
setModification(Size index, const String &modification)AASequence
setModification(Size index, const Residue *modification)AASequence
setModification(Size index, const ResidueModification *modification)AASequence
setModification(Size index, const ResidueModification &modification)AASequence
setModificationByDiffMonoMass(Size index, double diffMonoMass)AASequence
setNTerminalModification(const String &modification)AASequence
setNTerminalModification(const ResidueModification *modification)AASequence
setNTerminalModification(const ResidueModification &mod)AASequence
setNTerminalModificationByDiffMonoMass(double diffMonoMass, bool protein_term)AASequence
size() constAASequence
toBracketString(bool integer_mass=true, bool mass_delta=false, const std::vector< String > &fixed_modifications=std::vector< String >()) constAASequence
toString() constAASequence
toUniModString() constAASequence
toUnmodifiedString() constAASequence
~AASequence()=defaultAASequence