IDMapper Member List

This is the complete list of members for IDMapper, including all inherited members.

annotate(PeakMap &map, const std::vector< PeptideIdentification > &peptide_ids, const std::vector< ProteinIdentification > &protein_ids, const bool clear_ids=false, const bool map_ms1=false)	IDMapper
annotate(PeakMap &map, FeatureMap fmap, const bool clear_ids=false, const bool map_ms1=false)	IDMapper
annotate(FeatureMap &map, const std::vector< PeptideIdentification > &ids, const std::vector< ProteinIdentification > &protein_ids, bool use_centroid_rt=false, bool use_centroid_mz=false, const PeakMap &spectra=PeakMap())	IDMapper
annotate(ConsensusMap &map, const std::vector< PeptideIdentification > &ids, const std::vector< ProteinIdentification > &protein_ids, bool measure_from_subelements=false, bool annotate_ids_with_subelements=false, const PeakMap &spectra=PeakMap())	IDMapper
check_defaults_	DefaultParamHandler	protected
checkHits_(const std::vector< PeptideIdentification > &ids) const	IDMapper	protected
checkMassType_(const std::vector< DataProcessing > &processing) const	IDMapper	protected
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
error_name_	DefaultParamHandler	protected
getAbsoluteMZTolerance_(const double mz) const	IDMapper	protected
getDefaults() const	DefaultParamHandler
getIDDetails_(const PeptideIdentification &id, double &rt_pep, DoubleList &mz_values, IntList &charges, bool use_avg_mass=false) const	IDMapper	protected
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getSubsections() const	DefaultParamHandler
IDMapper()	IDMapper
IDMapper(const IDMapper &cp)	IDMapper
ignore_charge_	IDMapper	protected
increaseBoundingBox_(DBoundingBox< 2 > &box)	IDMapper	protected
isMatch_(const double rt_distance, const double mz_theoretical, const double mz_observed) const	IDMapper	protected
mapPrecursorsToIdentifications(const PeakMap &spectra, const std::vector< PeptideIdentification > &ids, double mz_tol=0.001, double rt_tol=0.001)	IDMapper	inlinestatic
Measure enum name	IDMapper
measure_	IDMapper	protected
MEASURE_DA enum value	IDMapper
MEASURE_PPM enum value	IDMapper
mz_tolerance_	IDMapper	protected
operator=(const IDMapper &rhs)	IDMapper
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)	DefaultParamHandler
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
rt_tolerance_	IDMapper	protected
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
subsections_	DefaultParamHandler	protected
updateMembers_() override	IDMapper	protectedvirtual
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")	DefaultParamHandler	static
~DefaultParamHandler()	DefaultParamHandler	virtual