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OpenMS
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This is the complete list of members for UniProtXMLHandler, including all inherited members.
| ActionMode enum name | XMLHandler | |
| alt_products_depth_ | UniProtXMLHandler | private |
| asBool_(const std::string &in) const | XMLHandler | inlineprotected |
| asDateTime_(std::string date_string) const | XMLHandler | inlineprotected |
| asDouble_(const std::string &in) const | XMLHandler | inlineprotected |
| asFloat_(const std::string &in) const | XMLHandler | inlineprotected |
| asInt_(const std::string &in) const | XMLHandler | inlineprotected |
| asInt_(const XMLCh *in) const | XMLHandler | inlineprotected |
| asUInt_(const std::string &in) const | XMLHandler | inlineprotected |
| attributeAsDouble_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | protected |
| attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | protected |
| attributeAsInt_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsIntList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | protected |
| attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | protected |
| attributeAsString_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| attributeAsStringList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | protected |
| attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | protected |
| callback_ | UniProtXMLHandler | private |
| capture_ | UniProtXMLHandler | private |
| CaptureTarget enum name | UniProtXMLHandler | |
| char_buf_ | UniProtXMLHandler | private |
| characters(const XMLCh *const chars, const XMLSize_t length) override | UniProtXMLHandler | |
| checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids) const | XMLHandler | |
| current_entry_ | UniProtXMLHandler | private |
| current_feature_ | UniProtXMLHandler | private |
| cv_terms_ | XMLHandler | protected |
| cvParamToValue(const ControlledVocabulary &cv, const std::string &parent_tag, const std::string &accession, const std::string &name, const std::string &value, const std::string &unit_accession) const | XMLHandler | |
| cvParamToValue(const ControlledVocabulary &cv, const CVTerm &raw_term) const | XMLHandler | |
| cvStringToEnum_(const Size section, const std::string &term, const char *message, const SignedSize result_on_error=0) | XMLHandler | protected |
| depth_ | UniProtXMLHandler | private |
| endElement(const XMLCh *const uri, const XMLCh *const local_name, const XMLCh *const qname) override | UniProtXMLHandler | |
| entry_depth_ | UniProtXMLHandler | private |
| EntryCallback typedef | UniProtXMLHandler | |
| equal_(const XMLCh *a, const XMLCh *b) const | XMLHandler | inlineprotected |
| error(const xercesc::SAXParseException &exception) override | XMLHandler | |
| error(ActionMode mode, const std::string &msg, UInt line=0, UInt column=0) const | XMLHandler | |
| expectList_(const std::string &str) const | XMLHandler | inlineprivate |
| fatalError(const xercesc::SAXParseException &exception) override | XMLHandler | |
| fatalError(ActionMode mode, const std::string &msg, UInt line=0, UInt column=0) const | XMLHandler | |
| feature_depth_ | UniProtXMLHandler | private |
| file_ | XMLHandler | protected |
| fromXSDString(const std::string &type, const std::string &value) | XMLHandler | inlinestatic |
| full_name_captured_ | UniProtXMLHandler | private |
| gene_depth_ | UniProtXMLHandler | private |
| gene_name_is_primary_ | UniProtXMLHandler | private |
| getLoadDetail() const | XMLHandler | virtual |
| LD_ALLDATA enum value | XMLHandler | |
| LD_COUNTS_WITHOPTIONS enum value | XMLHandler | |
| LD_RAWCOUNTS enum value | XMLHandler | |
| LOAD enum value | XMLHandler | |
| load_detail_ | XMLHandler | protected |
| LOADDETAIL enum name | XMLHandler | |
| open_tags_ | XMLHandler | protected |
| optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsString_(std::string &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsString_(std::string &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
| optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
| organism_depth_ | UniProtXMLHandler | private |
| organism_name_is_scientific_ | UniProtXMLHandler | private |
| parsePosition_(const std::string &attr) | UniProtXMLHandler | privatestatic |
| recommended_name_depth_ | UniProtXMLHandler | private |
| reset() | XMLHandler | |
| resetEntry_() | UniProtXMLHandler | private |
| resetFeature_() | UniProtXMLHandler | private |
| sequence_depth_ | UniProtXMLHandler | private |
| setLoadDetail(const LOADDETAIL d) | XMLHandler | virtual |
| sm_ | XMLHandler | protected |
| startElement(const XMLCh *const uri, const XMLCh *const local_name, const XMLCh *const qname, const xercesc::Attributes &attrs) override | UniProtXMLHandler | |
| STORE enum value | XMLHandler | |
| UniProtXMLHandler(const std::string &filename, EntryCallback callback) | UniProtXMLHandler | |
| version_ | XMLHandler | protected |
| warning(const xercesc::SAXParseException &exception) override | XMLHandler | |
| warning(ActionMode mode, const std::string &msg, UInt line=0, UInt column=0) const | XMLHandler | |
| writeTo(std::ostream &) | XMLHandler | virtual |
| writeUserParam_(const std::string &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const | XMLHandler | protected |
| writeXMLEscape(const std::string &to_escape) | XMLHandler | inlinestatic |
| XMLHandler(const std::string &filename, const std::string &version) | XMLHandler | |
| XMLHandler() | XMLHandler | private |
| ~UniProtXMLHandler() override | UniProtXMLHandler | |
| ~XMLHandler() override | XMLHandler |
1.9.8 