35 #ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_BASEMODEL_H 36 #define OPENMS_TRANSFORMATIONS_FEATUREFINDER_BASEMODEL_H 68 defaults_.
setValue(
"cutoff", 0.0,
"Low intensity cutoff of the model. Peaks below this intensity are not considered part of the model.");
86 if (&source ==
this)
return *
this;
98 virtual IntensityType
getIntensity(
const PositionType & pos)
const = 0;
110 template <
typename PeakType>
119 template <
class PeakIterator>
142 virtual void getSamples(SamplesType & cont)
const = 0;
149 for (
typename SamplesType::const_iterator it = samples.begin(); it != samples.end(); ++it)
151 os << *it << std::endl;
166 #endif // OPENMS_TRANSFORMATIONS_FEATUREFINDER_BASEMODEL_H Param defaults_
Container for default parameters. This member should be filled in the constructor of derived classes!...
Definition: DefaultParamHandler.h:157
void setValue(const String &key, const DataValue &value, const String &description="", const StringList &tags=StringList())
Sets a value.
virtual bool isContained(const PositionType &pos) const
check if position pos is part of the model regarding the models cut-off.
Definition: BaseModel.h:101
Param param_
Container for current parameters.
Definition: DefaultParamHandler.h:150
virtual IntensityType getCutOff() const
get cutoff value
Definition: BaseModel.h:129
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
RawDataVector::iterator PeakIterator
Raw data iterator type.
Definition: OptimizePick.h:53
void fillIntensities(PeakIterator begin, PeakIterator end) const
Convenience function that applies fillIntensity() to an iterator range.
Definition: BaseModel.h:120
virtual void updateMembers_()
This method is used to update extra member variables at the end of the setParameters() method...
Definition: BaseModel.h:158
virtual void getSamples(std::ostream &os)
fill stream with reasonable set of samples from the model (i.e. for printing)
Definition: BaseModel.h:145
virtual void getSamples(SamplesType &cont) const =0
get reasonable set of samples from the model (i.e. for printing)
DPosition< D > PositionType
Definition: BaseModel.h:59
const DataValue & getValue(const String &key) const
Returns a value of a parameter.
BaseModel()
Default constructor.
Definition: BaseModel.h:65
void fillIntensity(PeakType &peak) const
Convenience function to set the intensity of a peak to the predicted intensity at its current positio...
Definition: BaseModel.h:111
double CoordinateType
Definition: BaseModel.h:58
double IntensityType
Definition: BaseModel.h:57
virtual ~BaseModel()
Destructor.
Definition: BaseModel.h:79
virtual DefaultParamHandler & operator=(const DefaultParamHandler &rhs)
Assignment operator.
A base class for all classes handling default parameters.
Definition: DefaultParamHandler.h:92
Abstract base class for all D-dimensional models.
Definition: BaseModel.h:51
static void registerChildren()
register all derived classes here (implemented in file BaseModel_impl.h)
IntensityType cut_off_
Definition: BaseModel.h:156
virtual IntensityType getIntensity(const PositionType &pos) const =0
access model predicted intensity at position pos
std::vector< PeakType > SamplesType
Definition: BaseModel.h:61
virtual BaseModel & operator=(const BaseModel &source)
assignment operator
Definition: BaseModel.h:84
Metafunction to choose among Peak1D respectively Peak2D through a template argument.
Definition: DPeak.h:61
DPeak< D >::Type PeakType
Definition: BaseModel.h:60
virtual void setCutOff(IntensityType cut_off)
set cutoff value
Definition: BaseModel.h:135
BaseModel(const BaseModel &source)
copy constructor
Definition: BaseModel.h:72