Home  · Classes  · Annotated Classes  · Modules  · Members  · Namespaces  · Related Pages
BiGaussFitter1D.h
Go to the documentation of this file.
1 // --------------------------------------------------------------------------
2 // OpenMS -- Open-Source Mass Spectrometry
3 // --------------------------------------------------------------------------
4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2017.
6 //
7 // This software is released under a three-clause BSD license:
8 // * Redistributions of source code must retain the above copyright
9 // notice, this list of conditions and the following disclaimer.
10 // * Redistributions in binary form must reproduce the above copyright
11 // notice, this list of conditions and the following disclaimer in the
12 // documentation and/or other materials provided with the distribution.
13 // * Neither the name of any author or any participating institution
14 // may be used to endorse or promote products derived from this software
15 // without specific prior written permission.
16 // For a full list of authors, refer to the file AUTHORS.
17 // --------------------------------------------------------------------------
18 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
19 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
20 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
21 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
22 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
23 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
24 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
25 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
26 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
27 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
28 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
29 //
30 // --------------------------------------------------------------------------
31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: $
33 // --------------------------------------------------------------------------
34 
35 
36 #ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_BIGAUSSFITTER1D_H
37 #define OPENMS_TRANSFORMATIONS_FEATUREFINDER_BIGAUSSFITTER1D_H
38 
41 
42 
43 namespace OpenMS
44 {
50  class OPENMS_DLLAPI BiGaussFitter1D :
51  public MaxLikeliFitter1D
52  {
53 public:
54 
57 
59  BiGaussFitter1D(const BiGaussFitter1D & source);
60 
62  virtual ~BiGaussFitter1D();
63 
65  virtual BiGaussFitter1D & operator=(const BiGaussFitter1D & source);
66 
68  static Fitter1D * create()
69  {
70  return new BiGaussFitter1D();
71  }
72 
74  QualityType fit1d(const RawDataArrayType & range, InterpolationModel * & model);
75 
77  static const String getProductName()
78  {
79  return "BiGaussFitter1D";
80  }
81 
82 protected:
83 
88 
89  void updateMembers_();
90  };
91 }
92 
93 #endif // OPENMS_TRANSFORMATIONS_FEATUREFINDER_BIGAUSSFITTER1D_H
A more convenient string class.
Definition: String.h:57
Abstract base class for all 1D-model fitters using maximum likelihood optimization.
Definition: MaxLikeliFitter1D.h:48
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
static Fitter1D * create()
create new BiGaussModel object (function needed by Factory)
Definition: BiGaussFitter1D.h:68
Calculates some basic statistical parameters of a distribution: sum, mean, variance, and provides the normal approximation.
Definition: BasicStatistics.h:68
BiGaussian distribution fitter (1-dim.) approximated using linear interpolation.
Definition: BiGaussFitter1D.h:50
static const String getProductName()
name of the model (needed by Factory)
Definition: BiGaussFitter1D.h:77
Abstract class for 1D-models that are approximated using linear interpolation.
Definition: InterpolationModel.h:55
Math::BasicStatistics statistics1_
statistics for first peak site
Definition: BiGaussFitter1D.h:85
Abstract base class for all 1D-dimensional model fitter.
Definition: Fitter1D.h:59
Math::BasicStatistics statistics2_
statistics for second peak site
Definition: BiGaussFitter1D.h:87
std::vector< PeakType > RawDataArrayType
Raw data container type using for the temporary storage of the input data.
Definition: Fitter1D.h:76

OpenMS / TOPP release 2.3.0 Documentation generated on Tue Jan 9 2018 18:21:59 using doxygen 1.8.13