36 #ifndef OPENMS_ANALYSIS_DENOVO_COMPNOVOIDENTIFICATIONCID_H 37 #define OPENMS_ANALYSIS_DENOVO_COMPNOVOIDENTIFICATIONCID_H 79 void getIdentifications(std::vector<PeptideIdentification> & ids,
const PeakMap & exp);
97 void reducePermuts_(std::set<String> & permuts,
const PeakSpectrum & CID_orig_spec,
double prefix,
double suffix);
99 void updateMembers_();
double precursor_mass_tolerance_
Definition: CompNovoIdentificationCID.h:101
CompNovoIdentificationBase::Permut Permut
Definition: CompNovoIdentificationCID.h:89
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
The representation of a 1D spectrum.
Definition: MSSpectrum.h:67
CompNovoIonScoringBase::IonScore IonScore
Definition: CompNovoIdentificationCID.h:88
run with CompNovoIdentificationCID
Definition: CompNovoIdentificationCID.h:54
In-Memory representation of a mass spectrometry experiment.
Definition: MSExperiment.h:82
run with CompNovoIdentificationBase
Definition: CompNovoIdentificationBase.h:58
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:128
IsotopeType
Definition: CompNovoIonScoringBase.h:60
CompNovoIonScoringBase::IsotopeType IsotopeType
Definition: CompNovoIdentificationCID.h:87
Simple class to store permutations and a score.
Definition: CompNovoIdentificationBase.h:186
Definition: CompNovoIonScoringBase.h:67
Map class based on the STL map (containing several convenience functions)
Definition: Map.h:51
Represents the peptide hits for a spectrum.
Definition: PeptideIdentification.h:63