ConsensusIDAlgorithmPEPIons.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// $Maintainer: Hendrik Weisser $
// $Authors: Andreas Bertsch, Marc Sturm, Sven Nahnsen, Hendrik Weisser $
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#ifndef OPENMS_ANALYSIS_ID_CONSENSUSIDALGORITHMPEPIONS_H
#define OPENMS_ANALYSIS_ID_CONSENSUSIDALGORITHMPEPIONS_H

#include <OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmSimilarity.h>

namespace OpenMS
{
  class OPENMS_DLLAPI ConsensusIDAlgorithmPEPIons :
    public ConsensusIDAlgorithmSimilarity
  {
  public:
    ConsensusIDAlgorithmPEPIons();

  private:
    double mass_tolerance_;

    Size min_shared_;

    ConsensusIDAlgorithmPEPIons(const ConsensusIDAlgorithmPEPIons&);

    ConsensusIDAlgorithmPEPIons& operator=(const ConsensusIDAlgorithmPEPIons&);

    virtual void updateMembers_();

    virtual double getSimilarity_(AASequence seq1, AASequence seq2);

  };

} // namespace OpenMS

#endif // OPENMS_ANALYSIS_ID_CONSENSUSIDALGORITHMPEPIONS_H