DeNovoAlgorithm.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// $Maintainer: Timo Sachsenberg $
// $Authors: Sandro Andreotti, Andreas Bertsch$
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#ifndef OPENMS_ANALYSIS_DENOVO_DENOVOALGORITHM_H
#define OPENMS_ANALYSIS_DENOVO_DENOVOALGORITHM_H

#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/ANALYSIS/DENOVO/DeNovoIonScoring.h>

namespace OpenMS
{
  class PeptideIdentification;

  class OPENMS_DLLAPI DeNovoAlgorithm :
    public DefaultParamHandler
  {
public:

    DeNovoAlgorithm();

    virtual ~DeNovoAlgorithm();

    DeNovoAlgorithm(const DeNovoAlgorithm & rhs);

    DeNovoAlgorithm & operator=(const DeNovoAlgorithm & rhs);

    virtual void generateCandidates(std::vector<PeptideIdentification> & candidates, const std::vector<std::vector<DeNovoIonScoring::IonScore> > & ion_scores, const PeakMap & exp) = 0;

    virtual void generateCandidates(PeptideIdentification & candidates, std::vector<DeNovoIonScoring::IonScore> & ion_scores, const PeakSpectrum & spec) = 0;

  };

} // namespace OpenMS

#endif // OPENMS_ANALYSIS_DENOVO_DENOVOALGORITHM_H