Home  · Classes  · Annotated Classes  · Modules  · Members  · Namespaces  · Related Pages
EmgModel.h
Go to the documentation of this file.
1 // --------------------------------------------------------------------------
2 // OpenMS -- Open-Source Mass Spectrometry
3 // --------------------------------------------------------------------------
4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2017.
6 //
7 // This software is released under a three-clause BSD license:
8 // * Redistributions of source code must retain the above copyright
9 // notice, this list of conditions and the following disclaimer.
10 // * Redistributions in binary form must reproduce the above copyright
11 // notice, this list of conditions and the following disclaimer in the
12 // documentation and/or other materials provided with the distribution.
13 // * Neither the name of any author or any participating institution
14 // may be used to endorse or promote products derived from this software
15 // without specific prior written permission.
16 // For a full list of authors, refer to the file AUTHORS.
17 // --------------------------------------------------------------------------
18 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
19 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
20 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
21 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
22 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
23 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
24 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
25 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
26 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
27 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
28 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
29 //
30 // --------------------------------------------------------------------------
31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: $
33 // --------------------------------------------------------------------------
34 
35 
36 #ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_EMGMODEL_H
37 #define OPENMS_TRANSFORMATIONS_FEATUREFINDER_EMGMODEL_H
38 
41 
42 
43 namespace OpenMS
44 {
50  class OPENMS_DLLAPI EmgModel :
51  public InterpolationModel
52  {
53 
54 public:
58 
60  EmgModel();
61 
63  EmgModel(const EmgModel & source);
64 
66  virtual ~EmgModel();
67 
69  virtual EmgModel & operator=(const EmgModel & source);
70 
72  static BaseModel<1> * create()
73  {
74  return new EmgModel();
75  }
76 
78  static const String getProductName()
79  {
80  return "EmgModel";
81  }
82 
84  void setOffset(CoordinateType offset);
85 
87  void setSamples();
88 
90  CoordinateType getCenter() const;
91 
92 protected:
93  CoordinateType min_;
94  CoordinateType max_;
95  BasicStatistics statistics_;
96  CoordinateType height_;
97  CoordinateType width_;
98  CoordinateType symmetry_;
99  CoordinateType retention_;
100 
101  void updateMembers_();
102  };
103 }
104 
105 #endif // OPENMS_TRANSFORMATIONS_FEATUREFINDER_EMGMODEL_H
InterpolationModel::CoordinateType CoordinateType
Definition: EmgModel.h:55
CoordinateType min_
Definition: EmgModel.h:93
Exponentially modified gaussian distribution model for elution profiles.
Definition: EmgModel.h:50
CoordinateType width_
Definition: EmgModel.h:97
A more convenient string class.
Definition: String.h:57
static BaseModel< 1 > * create()
create new EmgModel object (needed by Factory)
Definition: EmgModel.h:72
std::vector< value_type > container_type
Definition: LinearInterpolation.h:85
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
BasicStatistics statistics_
Definition: EmgModel.h:95
CoordinateType height_
Definition: EmgModel.h:96
Abstract class for 1D-models that are approximated using linear interpolation.
Definition: InterpolationModel.h:55
CoordinateType max_
Definition: EmgModel.h:94
LinearInterpolation::container_type ContainerType
Definition: EmgModel.h:57
CoordinateType symmetry_
Definition: EmgModel.h:98
static const String getProductName()
name of the model (needed by Factory)
Definition: EmgModel.h:78
CoordinateType retention_
Definition: EmgModel.h:99
Math::BasicStatistics< CoordinateType > BasicStatistics
Definition: EmgModel.h:56

OpenMS / TOPP release 2.3.0 Documentation generated on Tue Jan 9 2018 18:22:00 using doxygen 1.8.13