Home  · Classes  · Annotated Classes  · Modules  · Members  · Namespaces  · Related Pages
FastLowessSmoothing.h
Go to the documentation of this file.
1 // --------------------------------------------------------------------------
2 // OpenMS -- Open-Source Mass Spectrometry
3 // --------------------------------------------------------------------------
4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2017.
6 //
7 // This software is released under a three-clause BSD license:
8 // * Redistributions of source code must retain the above copyright
9 // notice, this list of conditions and the following disclaimer.
10 // * Redistributions in binary form must reproduce the above copyright
11 // notice, this list of conditions and the following disclaimer in the
12 // documentation and/or other materials provided with the distribution.
13 // * Neither the name of any author or any participating institution
14 // may be used to endorse or promote products derived from this software
15 // without specific prior written permission.
16 // For a full list of authors, refer to the file AUTHORS.
17 // --------------------------------------------------------------------------
18 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
19 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
20 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
21 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
22 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
23 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
24 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
25 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
26 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
27 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
28 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
29 //
30 // --------------------------------------------------------------------------
31 // $Maintainer: Hannes Roest $
32 // $Authors: Hannes Roest $
33 // --------------------------------------------------------------------------
34 
35 
36 #ifndef OPENMS_FILTERING_SMOOTHING_FASTLOWESSSMOOTHING_H
37 #define OPENMS_FILTERING_SMOOTHING_FASTLOWESSSMOOTHING_H
38 
39 #include <OpenMS/CONCEPT/Macros.h>
40 #include <vector>
41 #include <algorithm> // std::min, std::max
42 #include <functional>
43 
44 namespace OpenMS
45 {
46 
64  namespace FastLowessSmoothing
65  {
66 
102  int OPENMS_DLLAPI lowess(const std::vector<double>& x, const std::vector<double>& y,
103  double f, int nsteps, double delta, std::vector<double>& result);
104 
117  inline int OPENMS_DLLAPI lowess(const std::vector<double>& x, const std::vector<double>& y,
118  std::vector<double>& result)
119  {
120  OPENMS_PRECONDITION(x.size() == y.size(), "Vectors x and y must have the same length")
121  OPENMS_PRECONDITION(x.size() >= 2, "Need at least two points for smoothing")
122  OPENMS_PRECONDITION(std::adjacent_find(x.begin(), x.end(), std::greater<double>()) == x.end(),
123  "The vector x needs to be sorted")
124 
125  double delta = 0.01 * (x[ x.size()-1 ] - x[0]); // x is sorted
126  return lowess(x, y, 2.0/3, 3, delta, result);
127  }
128  }
129 
130 } // namespace OpenMS
131 #endif // OPENMS_FILTERING_SMOOTHING_FASTLOWESSSMOOTHING_H
#define OPENMS_PRECONDITION(condition, message)
Precondition macro.
Definition: openms/include/OpenMS/CONCEPT/Macros.h:107
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
int lowess(const std::vector< double > &x, const std::vector< double > &y, double f, int nsteps, double delta, std::vector< double > &result)
Computes a lowess smoothing fit on the input vectors.

OpenMS / TOPP release 2.3.0 Documentation generated on Tue Jan 9 2018 18:22:00 using doxygen 1.8.13