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FeatureFinderAlgorithmMRM.h
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34 
35 #ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_FEATUREFINDERALGORITHMMRM_H
36 #define OPENMS_TRANSFORMATIONS_FEATUREFINDER_FEATUREFINDERALGORITHMMRM_H
37 
39 
40 namespace OpenMS
41 {
42  class InterpolationModel;
43 
60  class OPENMS_DLLAPI FeatureFinderAlgorithmMRM :
62  public FeatureFinderDefs
63  {
64 public:
66 
71 
77 
78 public:
79 
80  enum
81  {
82  RT = Peak2D::RT,
84  };
85 
88 
90  virtual void run();
91 
92  static FeatureFinderAlgorithm* create();
93 
94  static const String getProductName();
95 
96 protected:
97 
98  double fitRT_(std::vector<Peak1D>& rt_input_data, InterpolationModel*& model) const;
99 
100  //Docu in base class
101  virtual void updateMembers_();
102  };
103 
104 } // namespace OpenMS
105 
106 #endif // OPENMS_TRANSFORMATIONS_FEATUREFINDER_FEATUREFINDERALGORITHMMRM_H
Param defaults_
Container for default parameters. This member should be filled in the constructor of derived classes!...
Definition: DefaultParamHandler.h:157
A more convenient string class.
Definition: String.h:57
FeatureFinder * ff_
Pointer to the calling FeatureFinder that is used to access the feature flags.
Definition: FeatureFinderAlgorithm.h:146
FeatureFinderAlgorithm for MRM experiments.
Definition: FeatureFinderAlgorithmMRM.h:60
FeatureMap * features_
Output data pointer.
Definition: FeatureFinderAlgorithm.h:143
Param param_
Container for current parameters.
Definition: DefaultParamHandler.h:150
const MapType * map_
Input data pointer.
Definition: FeatureFinderAlgorithm.h:140
Retention time dimension id (0 if used as a const int)
Definition: Peak2D.h:76
Abstract base class for FeatureFinder algorithms.
Definition: FeatureFinderAlgorithm.h:75
MapType::SpectrumType SpectrumType
Definition: FeatureFinderAlgorithmMRM.h:68
Mass-to-charge dimension id (1 if used as a const int)
Definition: Peak2D.h:77
FeatureFinderAlgorithm::MapType MapType
Definition: FeatureFinderAlgorithmMRM.h:67
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
The purpose of this struct is to provide definitions of classes and typedefs which are used throughou...
Definition: FeatureFinderDefs.h:51
std::vector< FloatDataArray > FloatDataArrays
Definition: MSSpectrum.h:90
Abstract class for 1D-models that are approximated using linear interpolation.
Definition: InterpolationModel.h:55
The representation of a 1D spectrum.
Definition: MSSpectrum.h:67
SpectrumType::FloatDataArrays FloatDataArrays
Definition: FeatureFinderAlgorithmMRM.h:69
In-Memory representation of a mass spectrometry experiment.
Definition: MSExperiment.h:82

OpenMS / TOPP release 2.3.0 Documentation generated on Tue Jan 9 2018 18:22:00 using doxygen 1.8.13