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Fitter1D.h
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34 
35 #ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_FITTER1D_H
36 #define OPENMS_TRANSFORMATIONS_FEATUREFINDER_FITTER1D_H
37 
40 #include <OpenMS/KERNEL/Feature.h>
41 #include <OpenMS/KERNEL/Peak1D.h>
44 
45 namespace OpenMS
46 {
47  class InterpolationModel;
48 
59  class OPENMS_DLLAPI Fitter1D :
60  public DefaultParamHandler,
61  public FeatureFinderDefs
62  {
63 public:
64 
74  typedef Peak1D PeakType;
76  typedef std::vector<PeakType> RawDataArrayType;
78  typedef RawDataArrayType::iterator PeakIterator;
79 
81  Fitter1D();
82 
84  Fitter1D(const Fitter1D& source);
85 
87  virtual ~Fitter1D()
88  {
89  }
90 
92  virtual Fitter1D& operator=(const Fitter1D& source);
93 
95  virtual QualityType fit1d(const RawDataArrayType& /* range */, InterpolationModel*& /* model */);
96 
98  static void registerChildren();
99 
100 protected:
101 
103  CoordinateType tolerance_stdev_box_;
107  CoordinateType interpolation_step_;
108 
109  virtual void updateMembers_();
110 
111  };
112 
113 }
114 
115 #endif // OPENMS_TRANSFORMATIONS_FEATUREFINDER_FITTER1D_H
IsotopeCluster::ChargedIndexSet ChargedIndexSet
IndexSet with charge information.
Definition: Fitter1D.h:68
virtual ~Fitter1D()
destructor
Definition: Fitter1D.h:87
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
Calculates some basic statistical parameters of a distribution: sum, mean, variance, and provides the normal approximation.
Definition: BasicStatistics.h:68
The purpose of this struct is to provide definitions of classes and typedefs which are used throughou...
Definition: FeatureFinderDefs.h:51
Abstract class for 1D-models that are approximated using linear interpolation.
Definition: InterpolationModel.h:55
CoordinateType tolerance_stdev_box_
standard derivation in bounding box
Definition: Fitter1D.h:103
Feature::QualityType QualityType
Quality of a feature.
Definition: Fitter1D.h:72
A 1-dimensional raw data point or peak.
Definition: Peak1D.h:55
Feature::CoordinateType CoordinateType
Single coordinate.
Definition: Fitter1D.h:70
index set with associated charge estimate
Definition: IsotopeCluster.h:53
RawDataArrayType::iterator PeakIterator
Raw data iterator.
Definition: Fitter1D.h:78
Abstract base class for all 1D-dimensional model fitter.
Definition: Fitter1D.h:59
IsotopeCluster::IndexSet IndexSet
IndexSet.
Definition: Fitter1D.h:66
Math::BasicStatistics statistics_
basic statistics
Definition: Fitter1D.h:105
A base class for all classes handling default parameters.
Definition: DefaultParamHandler.h:92
Peak1D PeakType
Raw data point type.
Definition: Fitter1D.h:74
std::set< IndexPair > IndexSet
A set of index pairs, usually referring to an MSExperiment.
Definition: IsotopeCluster.h:50
std::vector< PeakType > RawDataArrayType
Raw data container type using for the temporary storage of the input data.
Definition: Fitter1D.h:76
CoordinateType interpolation_step_
interpolation step size
Definition: Fitter1D.h:107

OpenMS / TOPP release 2.3.0 Documentation generated on Tue Jan 9 2018 18:22:00 using doxygen 1.8.13