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IBSpectraFile.h
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34 
35 #ifndef OPENMS_FORMAT_IBSPECTRAFILE_H
36 #define OPENMS_FORMAT_IBSPECTRAFILE_H
37 
38 #include <OpenMS/config.h>
40 
41 // boost shared_ptr
42 #include <boost/shared_ptr.hpp>
43 
44 namespace OpenMS
45 {
46 
47  // forward declaration
48  class ConsensusMap;
49  class String;
50  class IsobaricQuantitationMethod;
51  class AASequence;
52 
57  class OPENMS_DLLAPI IBSpectraFile
58  {
59 public:
63  IBSpectraFile();
64 
68  IBSpectraFile(const IBSpectraFile& other);
69 
73  IBSpectraFile& operator=(const IBSpectraFile& rhs);
74 
83  void store(const String& filename, const ConsensusMap& cm);
84 private:
85 
91  boost::shared_ptr<IsobaricQuantitationMethod> guessExperimentType_(const ConsensusMap& cm);
92 
98  StringList constructHeader_(const IsobaricQuantitationMethod& quantMethod);
99 
106  String getModifString_(const AASequence& sequence);
107  };
108 
109 }
110 
111 #endif // #ifndef OPENMS_FORMAT_IBSPECTRAFILE_H
A more convenient string class.
Definition: String.h:57
A container for consensus elements.
Definition: ConsensusMap.h:72
Representation of a peptide/protein sequence.
Definition: AASequence.h:108
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
Implements the export of consensusmaps into the IBSpectra format used by isobar to load quantificatio...
Definition: IBSpectraFile.h:57
std::vector< String > StringList
Vector of String.
Definition: ListUtils.h:74
Abstract base class describing an isobaric quantitation method in terms of the used channels and an i...
Definition: IsobaricQuantitationMethod.h:55

OpenMS / TOPP release 2.3.0 Documentation generated on Tue Jan 9 2018 18:22:00 using doxygen 1.8.13