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IMSAlphabetParser.h
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31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Anton Pervukhin <Anton.Pervukhin@CeBiTec.Uni-Bielefeld.DE> $
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35 
36 #ifndef OPENMS_CHEMISTRY_MASSDECOMPOSITION_IMS_IMSALPHABETPARSER_H
37 #define OPENMS_CHEMISTRY_MASSDECOMPOSITION_IMS_IMSALPHABETPARSER_H
38 
39 #include <fstream>
40 #include <istream>
41 #include <map>
42 #include <string>
43 
45 
46 namespace OpenMS
47 {
48 
49  namespace ims
50  {
51 
61  template <typename AlphabetElementType = double,
62  typename Container = std::map<std::string, AlphabetElementType>,
63  typename InputSource = std::istream>
65  {
66 public:
70  typedef Container ContainerType;
71 
79  void load(const std::string & fname);
80 
86  virtual ContainerType & getElements() = 0;
87 
93  virtual void parse(InputSource & is) = 0;
94 
96  virtual ~IMSAlphabetParser() {}
97  };
98 
99  template <typename AlphabetElementType, typename Container, typename InputSource>
101  {
102  std::ifstream ifs(fname.c_str());
103  if (!ifs)
104  {
105  throw Exception::IOException(__FILE__, __LINE__, OPENMS_PRETTY_FUNCTION, fname);
106  }
107  this->parse(ifs);
108  }
109 
110  } // namespace ims
111 } // namespace OpenMS
112 
113 #endif // OPENMS_CHEMISTRY_MASSDECOMPOSITION_IMS_ALPHABETPARSER_H
virtual ContainerType & getElements()=0
virtual void parse(InputSource &is)=0
void load(const std::string &fname)
Definition: IMSAlphabetParser.h:100
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
Container ContainerType
Definition: IMSAlphabetParser.h:70
virtual ~IMSAlphabetParser()
Destructor.
Definition: IMSAlphabetParser.h:96
General IOException.
Definition: Exception.h:581
An abstract templatized parser to load the data that is used to initialize Alphabet objects...
Definition: IMSAlphabetParser.h:64

OpenMS / TOPP release 2.3.0 Documentation generated on Tue Jan 9 2018 18:22:01 using doxygen 1.8.13