35 #ifndef OPENMS_ANALYSIS_QUANTITATION_ISOBARICNORMALIZER_H 36 #define OPENMS_ANALYSIS_QUANTITATION_ISOBARICNORMALIZER_H 47 class IsobaricQuantitationMethod;
93 void buildVectorIndex_(
const ConsensusMap& consensus_map);
109 void computeNormalizationFactors_(std::vector<Peak2D::IntensityType>& normalization_factors);
126 #endif // OPENMS_ANALYSIS_QUANTITATION_ISOBARICNORMALIZER_H
A more convenient string class.
Definition: String.h:57
A container for consensus elements.
Definition: ConsensusMap.h:72
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
OPENSWATHALGO_DLLAPI void normalize(const std::vector< double > &intensities, double normalization_factor, std::vector< double > &normalized_intensities)
Normalize intensities in vector by normalization_factor.
String reference_channel_name_
The name of the reference channel as given in the IsobaricChannelInformation.
Definition: IsobaricNormalizer.h:77
const IsobaricQuantitationMethod * quant_meth_
The selected quantitation method that will be used for the normalization.
Definition: IsobaricNormalizer.h:74
Size ref_map_id_
The index of the reference channel in the peptide ratio/intensity vectors.
Definition: IsobaricNormalizer.h:115
std::vector< std::vector< Peak2D::IntensityType > > peptide_ratios_
Collection containing the collected peptide ratios for the individual channels.
Definition: IsobaricNormalizer.h:118
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:128
std::vector< std::vector< Peak2D::IntensityType > > peptide_intensities_
Collection containing the collected peptide intensities for the individual channels.
Definition: IsobaricNormalizer.h:121
Map< Size, Size > map_to_vec_index_
The mapping between map indices and the corresponding indices in the peptide ratio/intensity vectors...
Definition: IsobaricNormalizer.h:112
Abstract base class describing an isobaric quantitation method in terms of the used channels and an i...
Definition: IsobaricQuantitationMethod.h:55
Performs median normalization on the extracted ratios of isobaric labeling experiment.
Definition: IsobaricNormalizer.h:53
A 2-dimensional consensus feature.
Definition: ConsensusFeature.h:65