ItraqFourPlexQuantitationMethod.h

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// $Maintainer: Timo Sachsenberg $
// $Authors: Stephan Aiche $
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#ifndef OPENMS_ANALYSIS_QUANTITATION_ITRAQFOURPLEXQUANTITATIONMETHOD_H
#define OPENMS_ANALYSIS_QUANTITATION_ITRAQFOURPLEXQUANTITATIONMETHOD_H

#include <OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h>

namespace OpenMS
{
  class OPENMS_DLLAPI ItraqFourPlexQuantitationMethod :
    public IsobaricQuantitationMethod
  {
public:
    ItraqFourPlexQuantitationMethod();

    ~ItraqFourPlexQuantitationMethod();

    ItraqFourPlexQuantitationMethod(const ItraqFourPlexQuantitationMethod& other);

    ItraqFourPlexQuantitationMethod& operator=(const ItraqFourPlexQuantitationMethod& rhs);


    const String& getName() const;

    const IsobaricChannelList& getChannelInformation() const;

    Size getNumberOfChannels() const;

    virtual Matrix<double> getIsotopeCorrectionMatrix() const;

    Size getReferenceChannel() const;
    

private:
    IsobaricChannelList channels_;

    static const String name_;
    
    Size reference_channel_;

protected:
    void setDefaultParams_();

    void updateMembers_();
  };
} // namespace

#endif // OPENMS_ANALYSIS_QUANTITATION_ITRAQFOURPLEXQUANTITATIONMETHOD_H