MSDataSqlConsumer.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// $Maintainer: Hannes Roest $
// $Authors: Hannes Roest $
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#ifndef OPENMS_FORMAT_DATAACCESS_MSDATASQLCONSUMER_H
#define OPENMS_FORMAT_DATAACCESS_MSDATASQLCONSUMER_H

#include <OpenMS/INTERFACES/IMSDataConsumer.h>

#include <OpenMS/FORMAT/HANDLERS/MzMLSqliteHandler.h>

namespace OpenMS
{
    class OPENMS_DLLAPI MSDataSqlConsumer :
      public Interfaces::IMSDataConsumer
    {
      typedef MSExperiment MapType;
      typedef MapType::SpectrumType SpectrumType;
      typedef MapType::ChromatogramType ChromatogramType;

    public:

      MSDataSqlConsumer(String filename, bool clearData=true, int buffer_size = 500);

      ~MSDataSqlConsumer();

      void flush();

      void consumeSpectrum(SpectrumType & s);

      void consumeChromatogram(ChromatogramType & c);

      void setExpectedSize(Size /* expectedSpectra */, Size /* expectedChromatograms */);

      void setExperimentalSettings(const ExperimentalSettings& /* exp */);

    protected:

      OpenMS::Internal::MzMLSqliteHandler sql_writer_;
      bool clearData_;
      size_t flush_after_;
      std::vector<SpectrumType> spectra_;
      std::vector<ChromatogramType> chromatograms_;
    };

} //end namespace OpenMS

#endif // OPENMS_FORMAT_DATAACCESS_MSDATASQLCONSUMER_H